| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42521677
Identifier: 42521677
GI number: 42521677
Start: 25900
End: 27543
Strand: Direct
Name: 42521677
Synonym: Bd0029
Alternate gene names: NA
Gene position: 25900-27543 (Clockwise)
Preceding gene: 42521676
Following gene: 42521680
Centisome position: 0.68
GC content: 49.76
Gene sequence:
>1644_bases ATGAAAGGGCTTATCGGAAGAGCCTCCAAGGCAGCCATCTTCGGTTTGCTGATCACAGGATTGAACGCGTTTGCAGCAAC GCCGGAATCCGTACCTGGTGAATTCATCGTAAAATTCAAGGACGAAGCCGTCGCAGTTTCTTCCATGAAAGAGCTGAGCC AGGATCTGGGTTCTTACATTAAAGATGTAATCCCTGGTCAAAACATCGTCGTGATCAAACGCCCGGTGTTTGAAATCCAA TCCAACGTGATGAAATCCCTGGCGATGAATCCCAACGTGGACATCGTTGAGCCGAACTTCATCTATAGAATCAATAAAAC TCCCAACGATCCAATGCTGGGTCAATTGTGGGGCATGATCAACACTGGTCAGGCTGATTCCCAAAAACGTGAGGGCATTG CCGGCATCGACATTGGTGCGGAACAAGCTTGGGATATCACGACGGGTTCCAAAGATGTTGTTGTTGCCGTAATCGACACG GGTATCAACTACAACCATCCGGATCTGAAATCCAATCTTTGGACGAACGATGCAGAACTAAATGGTAAAGCGGGTGTTGA TGACGACGGCAACGGCATCATCGATGACATTTACGGTGCAAACTTTGTAACAGCGGCGAAACCAACCGGCAATCCATTGG ATGATCACGGTCACGGTTCTCACTGCTCTGGTACCATCGGTGCTTCCGGTGACGATGGCAAAGGTCTTGTGGGCGTGGCT TGGAATGTTCGCATCATGGGTGTGAAATTCCTTTCTGCGAGCGGTTCCGGTTCTTTGGACGGCGCTTTGAAAGCCATTGA TTACGCAACTTCCAAGGGTGCAAAAATCCTTTCCAACTCCTGGGGTGGCGGTGGTTACTCTGAGACTTTGAAACAAGCGA TCGAAAGATCCAACGCTGCAGGTACTTTGTTTGTGGCGGCTGCGGGGAATGAATCCAACAACAACGATTCCAACCCGACT TACCCTGCAACTTACGATGTGCCAAACGTGTTGTCTGTCGCAGCTATCGACAACCGCGGTCAGATCGCCTCCTTCTCGAA CTATGGTAAAACCAAAGTTCACGTGGGCGCTCCGGGTGTGAACATCGTTTCCTCCATCACAGGTGCGGGTTACGATTCCT GGTCTGGTACTTCCATGGCGACACCTCACGTGTCTGGTATGGCCGTTCTTCTGGCAACAGCAGAGCCGAATCTGACAGGT ATCGAGATGAAAGAAAGAATTATCGCGACTTCCAAGCCTCTGGCGGGTCTTCGTGGTAAATCCAAAGGTGGTTTGGCAAA TGCTTACACCATGCTGACAAACACCCTGCCACAGCCGGATCCAAACGATCCCGTAAACTGGCAGACTGTGGATGTGGCTC ACTCCACTCCGCACCCTTACACCAACAAATCCAACCTGGTGTATGAAGTTTCTGTACCGGGCGCAAAGCAGATCTCTGTC TATTTCTCCAAGTTCGACACTGAGAGAGACTATGACAAAGTGGAGCTTTACGATGCCAATGGCAAACTTGTCGGCACCAT GAGCGGCAAGAACGATGAAACATTCTCTCCGGTGATTGATGGTGAGTATGTGAAGATCGTCTTCACTTCCGATGATTCAG TTAACAGATACGGTTTCGATATCACTAAAGCGGCGTGGAGATAA
Upstream 100 bases:
>100_bases AGCCCCCTTTCACATTGGTACCATTTTGGAACTAGGAAACGTCTGGGAAAATTTTTCCCCTTCGCTTTCTGGAAAATCAC CCAATGAAGGAGAGGATCAT
Downstream 100 bases:
>100_bases TAAGCCCCACTGGTGATTGAAAAAGCAAAAGCCACTCTGGAAATGAGTGGCTTTTTTATTTTCTAAGATTCAGATCTTAT TTTCTTTCACATCCAGCAGG
Product: subtilase
Products: NA
Alternate protein names: Ak.1 protease [H]
Number of amino acids: Translated: 547; Mature: 547
Protein sequence:
>547_residues MKGLIGRASKAAIFGLLITGLNAFAATPESVPGEFIVKFKDEAVAVSSMKELSQDLGSYIKDVIPGQNIVVIKRPVFEIQ SNVMKSLAMNPNVDIVEPNFIYRINKTPNDPMLGQLWGMINTGQADSQKREGIAGIDIGAEQAWDITTGSKDVVVAVIDT GINYNHPDLKSNLWTNDAELNGKAGVDDDGNGIIDDIYGANFVTAAKPTGNPLDDHGHGSHCSGTIGASGDDGKGLVGVA WNVRIMGVKFLSASGSGSLDGALKAIDYATSKGAKILSNSWGGGGYSETLKQAIERSNAAGTLFVAAAGNESNNNDSNPT YPATYDVPNVLSVAAIDNRGQIASFSNYGKTKVHVGAPGVNIVSSITGAGYDSWSGTSMATPHVSGMAVLLATAEPNLTG IEMKERIIATSKPLAGLRGKSKGGLANAYTMLTNTLPQPDPNDPVNWQTVDVAHSTPHPYTNKSNLVYEVSVPGAKQISV YFSKFDTERDYDKVELYDANGKLVGTMSGKNDETFSPVIDGEYVKIVFTSDDSVNRYGFDITKAAWR
Sequences:
>Translated_547_residues MKGLIGRASKAAIFGLLITGLNAFAATPESVPGEFIVKFKDEAVAVSSMKELSQDLGSYIKDVIPGQNIVVIKRPVFEIQ SNVMKSLAMNPNVDIVEPNFIYRINKTPNDPMLGQLWGMINTGQADSQKREGIAGIDIGAEQAWDITTGSKDVVVAVIDT GINYNHPDLKSNLWTNDAELNGKAGVDDDGNGIIDDIYGANFVTAAKPTGNPLDDHGHGSHCSGTIGASGDDGKGLVGVA WNVRIMGVKFLSASGSGSLDGALKAIDYATSKGAKILSNSWGGGGYSETLKQAIERSNAAGTLFVAAAGNESNNNDSNPT YPATYDVPNVLSVAAIDNRGQIASFSNYGKTKVHVGAPGVNIVSSITGAGYDSWSGTSMATPHVSGMAVLLATAEPNLTG IEMKERIIATSKPLAGLRGKSKGGLANAYTMLTNTLPQPDPNDPVNWQTVDVAHSTPHPYTNKSNLVYEVSVPGAKQISV YFSKFDTERDYDKVELYDANGKLVGTMSGKNDETFSPVIDGEYVKIVFTSDDSVNRYGFDITKAAWR >Mature_547_residues MKGLIGRASKAAIFGLLITGLNAFAATPESVPGEFIVKFKDEAVAVSSMKELSQDLGSYIKDVIPGQNIVVIKRPVFEIQ SNVMKSLAMNPNVDIVEPNFIYRINKTPNDPMLGQLWGMINTGQADSQKREGIAGIDIGAEQAWDITTGSKDVVVAVIDT GINYNHPDLKSNLWTNDAELNGKAGVDDDGNGIIDDIYGANFVTAAKPTGNPLDDHGHGSHCSGTIGASGDDGKGLVGVA WNVRIMGVKFLSASGSGSLDGALKAIDYATSKGAKILSNSWGGGGYSETLKQAIERSNAAGTLFVAAAGNESNNNDSNPT YPATYDVPNVLSVAAIDNRGQIASFSNYGKTKVHVGAPGVNIVSSITGAGYDSWSGTSMATPHVSGMAVLLATAEPNLTG IEMKERIIATSKPLAGLRGKSKGGLANAYTMLTNTLPQPDPNDPVNWQTVDVAHSTPHPYTNKSNLVYEVSVPGAKQISV YFSKFDTERDYDKVELYDANGKLVGTMSGKNDETFSPVIDGEYVKIVFTSDDSVNRYGFDITKAAWR
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
Organism=Homo sapiens, GI76443679, Length=350, Percent_Identity=27.1428571428571, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI20336244, Length=342, Percent_Identity=27.4853801169591, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI20336190, Length=359, Percent_Identity=24.2339832869081, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI27894285, Length=359, Percent_Identity=24.2339832869081, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI20336188, Length=359, Percent_Identity=24.2339832869081, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI20336180, Length=359, Percent_Identity=24.2339832869081, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI4505577, Length=359, Percent_Identity=24.2339832869081, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI20336186, Length=359, Percent_Identity=24.2339832869081, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI4505579, Length=351, Percent_Identity=25.0712250712251, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI20336182, Length=359, Percent_Identity=24.2339832869081, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI20336184, Length=359, Percent_Identity=24.2339832869081, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI295424143, Length=371, Percent_Identity=25.0673854447439, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI20336242, Length=371, Percent_Identity=25.0673854447439, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI299523015, Length=383, Percent_Identity=23.4986945169713, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI20336246, Length=386, Percent_Identity=23.5751295336788, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI31317307, Length=274, Percent_Identity=29.9270072992701, Blast_Score=73, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71987206, Length=375, Percent_Identity=26.1333333333333, Blast_Score=99, Evalue=5e-21, Organism=Caenorhabditis elegans, GI71983555, Length=506, Percent_Identity=24.703557312253, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI25141268, Length=415, Percent_Identity=23.855421686747, Blast_Score=91, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6320775, Length=357, Percent_Identity=30.5322128851541, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6324576, Length=328, Percent_Identity=28.3536585365854, Blast_Score=87, Evalue=9e-18, Organism=Saccharomyces cerevisiae, GI6319893, Length=268, Percent_Identity=30.2238805970149, Blast_Score=85, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6324091, Length=308, Percent_Identity=27.9220779220779, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI17136192, Length=332, Percent_Identity=27.4096385542169, Blast_Score=89, Evalue=9e-18, Organism=Drosophila melanogaster, GI281360987, Length=331, Percent_Identity=25.3776435045317, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24642494, Length=331, Percent_Identity=25.3776435045317, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24642490, Length=331, Percent_Identity=25.3776435045317, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI45555723, Length=331, Percent_Identity=25.3776435045317, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24642492, Length=331, Percent_Identity=25.3776435045317, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24642488, Length=333, Percent_Identity=25.2252252252252, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24642484, Length=333, Percent_Identity=25.2252252252252, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24642486, Length=333, Percent_Identity=25.2252252252252, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24650056, Length=324, Percent_Identity=24.0740740740741, Blast_Score=66, Evalue=6e-11, Organism=Drosophila melanogaster, GI45553515, Length=324, Percent_Identity=24.0740740740741, Blast_Score=66, Evalue=7e-11, Organism=Drosophila melanogaster, GI17864552, Length=324, Percent_Identity=24.0740740740741, Blast_Score=65, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 - InterPro: IPR009020 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: NA
Molecular weight: Translated: 57873; Mature: 57873
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS01180 CUB ; PS00136 SUBTILASE_ASP ; PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGLIGRASKAAIFGLLITGLNAFAATPESVPGEFIVKFKDEAVAVSSMKELSQDLGSYI CCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH KDVIPGQNIVVIKRPVFEIQSNVMKSLAMNPNVDIVEPNFIYRINKTPNDPMLGQLWGMI HHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCHHHHHHCCC NTGQADSQKREGIAGIDIGAEQAWDITTGSKDVVVAVIDTGINYNHPDLKSNLWTNDAEL CCCCCCCHHHCCCEEEECCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC NGKAGVDDDGNGIIDDIYGANFVTAAKPTGNPLDDHGHGSHCSGTIGASGDDGKGLVGVA CCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE WNVRIMGVKFLSASGSGSLDGALKAIDYATSKGAKILSNSWGGGGYSETLKQAIERSNAA EEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC GTLFVAAAGNESNNNDSNPTYPATYDVPNVLSVAAIDNRGQIASFSNYGKTKVHVGAPGV CEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCC NIVSSITGAGYDSWSGTSMATPHVSGMAVLLATAEPNLTGIEMKERIIATSKPLAGLRGK HHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCC SKGGLANAYTMLTNTLPQPDPNDPVNWQTVDVAHSTPHPYTNKSNLVYEVSVPGAKQISV CCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEE YFSKFDTERDYDKVELYDANGKLVGTMSGKNDETFSPVIDGEYVKIVFTSDDSVNRYGFD EEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCEEEEEEECCCCCCCCCCC ITKAAWR HHHHHCC >Mature Secondary Structure MKGLIGRASKAAIFGLLITGLNAFAATPESVPGEFIVKFKDEAVAVSSMKELSQDLGSYI CCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH KDVIPGQNIVVIKRPVFEIQSNVMKSLAMNPNVDIVEPNFIYRINKTPNDPMLGQLWGMI HHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCHHHHHHCCC NTGQADSQKREGIAGIDIGAEQAWDITTGSKDVVVAVIDTGINYNHPDLKSNLWTNDAEL CCCCCCCHHHCCCEEEECCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC NGKAGVDDDGNGIIDDIYGANFVTAAKPTGNPLDDHGHGSHCSGTIGASGDDGKGLVGVA CCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE WNVRIMGVKFLSASGSGSLDGALKAIDYATSKGAKILSNSWGGGGYSETLKQAIERSNAA EEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC GTLFVAAAGNESNNNDSNPTYPATYDVPNVLSVAAIDNRGQIASFSNYGKTKVHVGAPGV CEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCC NIVSSITGAGYDSWSGTSMATPHVSGMAVLLATAEPNLTGIEMKERIIATSKPLAGLRGK HHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCC SKGGLANAYTMLTNTLPQPDPNDPVNWQTVDVAHSTPHPYTNKSNLVYEVSVPGAKQISV CCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEE YFSKFDTERDYDKVELYDANGKLVGTMSGKNDETFSPVIDGEYVKIVFTSDDSVNRYGFD EEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCEEEEEEECCCCCCCCCCC ITKAAWR HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7993087; 10588904 [H]