| Definition | Cupriavidus necator megaplasmid pHG1, complete sequence. |
|---|---|
| Accession | NC_005241 |
| Length | 452,156 |
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The map label for this gene is trbE [H]
Identifier: 38638023
GI number: 38638023
Start: 374871
End: 377327
Strand: Direct
Name: trbE [H]
Synonym: PHG362
Alternate gene names: 38638023
Gene position: 374871-377327 (Clockwise)
Preceding gene: 38638022
Following gene: 38638024
Centisome position: 82.91
GC content: 60.77
Gene sequence:
>2457_bases ATGCTGAAACTCAAACGCCGGCCGCTGGCAGAGATCGTGCCGTGGCTCACTTCCCTCACCCCGGAGCTGATCCTGAACAA GGACGGCTCCCTTCTTGCGACCTACGAGTTTCGCGGCGTCGATGCGGACAGCGCCGACGCCAGTGACATCACATCGGCCC GAGACCAGCTCGACCAGGCTTGCCGATCCTTCGACAACCGGATCACAGCCTGGTGGCGCCTGTCCCATCGCCGAACCACC GGCTTCATTGACGGCGAATTCAGTAACGCTGCGGACGCGCGCCTCAACGCGCTCAACCGCACGCACATGACTACGGGCCG ATACTTCCGCAACACGCACGCGCTCAGCATCGCCTATACACCCGAATCGGGCATCGCCAAGTTCTTTGAAAAGATCGGTT ACCACATGACGGTGGGCGGACGATCGGTCTACGGCGCCATTGTTGAAGCCGCCAAGGATACTGTGCTCTCTCGCAGTGCG TTCGCCTTCGATATGGAAAAAATGCGCGCCGATACCCGCCGTTTCGAGGCCATGCTTGACGCGTTTGCCGGCGGCATCCC GCGCATTAAGCCGACCCGGCTCACGATGCAGGACAGCTATGCGGCGCTCCACCAGGTTGCCAACCCCAGCGTGCCGCCGC GTCGCATCCGCTATCCGGTCACCTTGCTCGACACGCACCTGACTGAATCCGAGGTCACAGTGGGCGCCGAGCGACTGTTG TTCGAATCTGCCCACGGCAAGCGCTATGCGGCAGTGGTCGCGGTGAAGGAATGGATGAGCTTTCAGGAAGCGGCACTAGA CAGTCTCCTGCAGGTCGATGCCGAACTGGACATCTGCATCATGTACCGCTTCCTCGACACTGCACGCGCGACCGCCTACA TCGAGAAGGTTCGCCGCTTCTACAAGATGGCCGCGGTGAACCTGCGCTCCATGATGAAGCAGTACGTCTCGAAGGAGGAA AGCGAGAACGACGAAGGCCGTGAAGAGCTCGCCAAGGAAGCGGGTCACGCCCTCAAACGGCTCACCGCCGAGGGCGTGCA GCACGGCTTTGCCAACATTTCGGTGATTATCTACGCGGATTCGGAAAGTGAATGCGAGGACGCCGTCAGCGAGGTGGTCG GCGCATTGACCAACGCCGGCTTCGGGGCGATCCGCGAGAAGGCCAATCTGATGCCTGCCTGGAACAGCACCCTGCCCGGT CGCTGGGACAAGCAACGGCGACTGCAGTTCGTCGAAACGCCTGCCGTGTCCGATATCGCACCCGTCCGCTCCGTTCTGGA AGGCCCAACCTTCAACGCATGGCTGAGCGAGAAGACCGGCGCCGAGGTTCCCCCGCTCACCTGCCTGCCGACCCGCCACC GGACTATCCAGCGCGTCGACATGCATCAGCGGGGCGGCAATGGTCATTTGTTCGTGATCGGCCCGATTGGTGCCGGCAAA TCCGTATTCCTCAACTTTCTGGTGTCGCAGGGCGACAGGCACAAGGCGCGTCGGATTCGCTTCGACAAGGATAGATCTAC CCGCATTCCCACGCTGCTCAGTGGCGGCACGTTCATCGACGTGACGGGCAAGTTCCAGACCGGCACGCCGGTCAATCCCT TGTCGCTGCTGGCCGATCCCGCGAACTTCACCTACGTCACGGAATGGCTGACGCTCGCCCTCGAAGACGATGACTTCACG CTGTCGCCGCAGCAAGTCCAGGACCTCTTCGAGGCCGTGAAGCTGGTCGCTGGATACCCCCGCGAACGCTGGACCCTCAG TTCGCTCTCGACGATGCTGCATGCTGATCTTCGCGCGCGGCTTCAGATCTGGCTCAAGGGTGGTCAATACGGTCACTTCT TCGATCACGCCGAAGACGCATTCGCCGTCAGTGACAACCTTTGCATCGAGATGGGTGAGCTGTTCCAGAAGTATGAACGC GCAGCGGTCCTGTTCACCGACTATGCCTTCCATCGCATCAGCCAGTCGATGGACGGTATCCGCTACACGATCATCGAGGT GGAGGAATGCGGCTTCTTCTTCCAGAACGAACGCTTCTATCGGCGCTACGAGGATTGGATTACCACCATTCGGAAGCTCA ACGGCGCCATCTGGTCCGCGACGCAGTCTCTTCGCCAGATTGCACGCGTCGCGAACTTCGAAATCCTCAAGGAAAACATC GCCAACTGGGTCTACCTGCCTAACGGCCAGGCCAAGACCAGTCCGGAGCTCTACAAGGACAAGTTTGGCCTGACCGATGA TCAGGTTCAGCTGATCTCTGAGGCGGTGCCAAACCGCGACTACCTCCTGATCACGAACACCCAGACCCGGATGCTGCAGA CGGCATTTTCCGACGAGATGGTAGCCATGCTGCGCTCGGACGGTGTCGCACAGTCCATCTGCGACAAGCACCATGCATCG GGCGGACCCGACTGGCAAGACCGCTACGTGCGCGAAATGCTCGCGCGCGCAGCATAA
Upstream 100 bases:
>100_bases ACGTCTACAACATGTACGGCGACCTGTACGAGTCGGTGCCCTGGCACGGCAAGTCCGACGCGGTGTTCCGCCGCCCGTAC GGCTTTGACAGTGACTTGCC
Downstream 100 bases:
>100_bases CTTTGGAGAAGCAACGTGAAGAAGTGGATCGCCAACATCGCCATCGCCACCTCGGTATTCGGGGCTTCTTCGGCCCATGC CGCGCTGCCCGTCACCGACT
Product: putative TrbE-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 818; Mature: 818
Protein sequence:
>818_residues MLKLKRRPLAEIVPWLTSLTPELILNKDGSLLATYEFRGVDADSADASDITSARDQLDQACRSFDNRITAWWRLSHRRTT GFIDGEFSNAADARLNALNRTHMTTGRYFRNTHALSIAYTPESGIAKFFEKIGYHMTVGGRSVYGAIVEAAKDTVLSRSA FAFDMEKMRADTRRFEAMLDAFAGGIPRIKPTRLTMQDSYAALHQVANPSVPPRRIRYPVTLLDTHLTESEVTVGAERLL FESAHGKRYAAVVAVKEWMSFQEAALDSLLQVDAELDICIMYRFLDTARATAYIEKVRRFYKMAAVNLRSMMKQYVSKEE SENDEGREELAKEAGHALKRLTAEGVQHGFANISVIIYADSESECEDAVSEVVGALTNAGFGAIREKANLMPAWNSTLPG RWDKQRRLQFVETPAVSDIAPVRSVLEGPTFNAWLSEKTGAEVPPLTCLPTRHRTIQRVDMHQRGGNGHLFVIGPIGAGK SVFLNFLVSQGDRHKARRIRFDKDRSTRIPTLLSGGTFIDVTGKFQTGTPVNPLSLLADPANFTYVTEWLTLALEDDDFT LSPQQVQDLFEAVKLVAGYPRERWTLSSLSTMLHADLRARLQIWLKGGQYGHFFDHAEDAFAVSDNLCIEMGELFQKYER AAVLFTDYAFHRISQSMDGIRYTIIEVEECGFFFQNERFYRRYEDWITTIRKLNGAIWSATQSLRQIARVANFEILKENI ANWVYLPNGQAKTSPELYKDKFGLTDDQVQLISEAVPNRDYLLITNTQTRMLQTAFSDEMVAMLRSDGVAQSICDKHHAS GGPDWQDRYVREMLARAA
Sequences:
>Translated_818_residues MLKLKRRPLAEIVPWLTSLTPELILNKDGSLLATYEFRGVDADSADASDITSARDQLDQACRSFDNRITAWWRLSHRRTT GFIDGEFSNAADARLNALNRTHMTTGRYFRNTHALSIAYTPESGIAKFFEKIGYHMTVGGRSVYGAIVEAAKDTVLSRSA FAFDMEKMRADTRRFEAMLDAFAGGIPRIKPTRLTMQDSYAALHQVANPSVPPRRIRYPVTLLDTHLTESEVTVGAERLL FESAHGKRYAAVVAVKEWMSFQEAALDSLLQVDAELDICIMYRFLDTARATAYIEKVRRFYKMAAVNLRSMMKQYVSKEE SENDEGREELAKEAGHALKRLTAEGVQHGFANISVIIYADSESECEDAVSEVVGALTNAGFGAIREKANLMPAWNSTLPG RWDKQRRLQFVETPAVSDIAPVRSVLEGPTFNAWLSEKTGAEVPPLTCLPTRHRTIQRVDMHQRGGNGHLFVIGPIGAGK SVFLNFLVSQGDRHKARRIRFDKDRSTRIPTLLSGGTFIDVTGKFQTGTPVNPLSLLADPANFTYVTEWLTLALEDDDFT LSPQQVQDLFEAVKLVAGYPRERWTLSSLSTMLHADLRARLQIWLKGGQYGHFFDHAEDAFAVSDNLCIEMGELFQKYER AAVLFTDYAFHRISQSMDGIRYTIIEVEECGFFFQNERFYRRYEDWITTIRKLNGAIWSATQSLRQIARVANFEILKENI ANWVYLPNGQAKTSPELYKDKFGLTDDQVQLISEAVPNRDYLLITNTQTRMLQTAFSDEMVAMLRSDGVAQSICDKHHAS GGPDWQDRYVREMLARAA >Mature_818_residues MLKLKRRPLAEIVPWLTSLTPELILNKDGSLLATYEFRGVDADSADASDITSARDQLDQACRSFDNRITAWWRLSHRRTT GFIDGEFSNAADARLNALNRTHMTTGRYFRNTHALSIAYTPESGIAKFFEKIGYHMTVGGRSVYGAIVEAAKDTVLSRSA FAFDMEKMRADTRRFEAMLDAFAGGIPRIKPTRLTMQDSYAALHQVANPSVPPRRIRYPVTLLDTHLTESEVTVGAERLL FESAHGKRYAAVVAVKEWMSFQEAALDSLLQVDAELDICIMYRFLDTARATAYIEKVRRFYKMAAVNLRSMMKQYVSKEE SENDEGREELAKEAGHALKRLTAEGVQHGFANISVIIYADSESECEDAVSEVVGALTNAGFGAIREKANLMPAWNSTLPG RWDKQRRLQFVETPAVSDIAPVRSVLEGPTFNAWLSEKTGAEVPPLTCLPTRHRTIQRVDMHQRGGNGHLFVIGPIGAGK SVFLNFLVSQGDRHKARRIRFDKDRSTRIPTLLSGGTFIDVTGKFQTGTPVNPLSLLADPANFTYVTEWLTLALEDDDFT LSPQQVQDLFEAVKLVAGYPRERWTLSSLSTMLHADLRARLQIWLKGGQYGHFFDHAEDAFAVSDNLCIEMGELFQKYER AAVLFTDYAFHRISQSMDGIRYTIIEVEECGFFFQNERFYRRYEDWITTIRKLNGAIWSATQSLRQIARVANFEILKENI ANWVYLPNGQAKTSPELYKDKFGLTDDQVQLISEAVPNRDYLLITNTQTRMLQTAFSDEMVAMLRSDGVAQSICDKHHAS GGPDWQDRYVREMLARAA
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 92394; Mature: 92394
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKLKRRPLAEIVPWLTSLTPELILNKDGSLLATYEFRGVDADSADASDITSARDQLDQA CCCCCCCCHHHHHHHHHHCCHHHEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH CRSFDNRITAWWRLSHRRTTGFIDGEFSNAADARLNALNRTHMTTGRYFRNTHALSIAYT HHHHCCCEEEEEEECCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCHHCCCCEEEEEEEC PESGIAKFFEKIGYHMTVGGRSVYGAIVEAAKDTVLSRSAFAFDMEKMRADTRRFEAMLD CCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFAGGIPRIKPTRLTMQDSYAALHQVANPSVPPRRIRYPVTLLDTHLTESEVTVGAERLL HHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHEECCEEEHECCCCCCHHHHHHHHHH FESAHGKRYAAVVAVKEWMSFQEAALDSLLQVDAELDICIMYRFLDTARATAYIEKVRRF HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH YKMAAVNLRSMMKQYVSKEESENDEGREELAKEAGHALKRLTAEGVQHGFANISVIIYAD HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC SESECEDAVSEVVGALTNAGFGAIREKANLMPAWNSTLPGRWDKQRRLQFVETPAVSDIA CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHEECCCCCHHHH PVRSVLEGPTFNAWLSEKTGAEVPPLTCLPTRHRTIQRVDMHQRGGNGHLFVIGPIGAGK HHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCH SVFLNFLVSQGDRHKARRIRFDKDRSTRIPTLLSGGTFIDVTGKFQTGTPVNPLSLLADP HHHHHHHHCCCCCHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCHHHHHCCC ANFTYVTEWLTLALEDDDFTLSPQQVQDLFEAVKLVAGYPRERWTLSSLSTMLHADLRAR CCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHH LQIWLKGGQYGHFFDHAEDAFAVSDNLCIEMGELFQKYERAAVLFTDYAFHRISQSMDGI EEEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHCCCC RYTIIEVEECGFFFQNERFYRRYEDWITTIRKLNGAIWSATQSLRQIARVANFEILKENI EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH ANWVYLPNGQAKTSPELYKDKFGLTDDQVQLISEAVPNRDYLLITNTQTRMLQTAFSDEM CCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH VAMLRSDGVAQSICDKHHASGGPDWQDRYVREMLARAA HHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MLKLKRRPLAEIVPWLTSLTPELILNKDGSLLATYEFRGVDADSADASDITSARDQLDQA CCCCCCCCHHHHHHHHHHCCHHHEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH CRSFDNRITAWWRLSHRRTTGFIDGEFSNAADARLNALNRTHMTTGRYFRNTHALSIAYT HHHHCCCEEEEEEECCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCHHCCCCEEEEEEEC PESGIAKFFEKIGYHMTVGGRSVYGAIVEAAKDTVLSRSAFAFDMEKMRADTRRFEAMLD CCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFAGGIPRIKPTRLTMQDSYAALHQVANPSVPPRRIRYPVTLLDTHLTESEVTVGAERLL HHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHEECCEEEHECCCCCCHHHHHHHHHH FESAHGKRYAAVVAVKEWMSFQEAALDSLLQVDAELDICIMYRFLDTARATAYIEKVRRF HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH YKMAAVNLRSMMKQYVSKEESENDEGREELAKEAGHALKRLTAEGVQHGFANISVIIYAD HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC SESECEDAVSEVVGALTNAGFGAIREKANLMPAWNSTLPGRWDKQRRLQFVETPAVSDIA CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHEECCCCCHHHH PVRSVLEGPTFNAWLSEKTGAEVPPLTCLPTRHRTIQRVDMHQRGGNGHLFVIGPIGAGK HHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCH SVFLNFLVSQGDRHKARRIRFDKDRSTRIPTLLSGGTFIDVTGKFQTGTPVNPLSLLADP HHHHHHHHCCCCCHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCHHHHHCCC ANFTYVTEWLTLALEDDDFTLSPQQVQDLFEAVKLVAGYPRERWTLSSLSTMLHADLRAR CCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHH LQIWLKGGQYGHFFDHAEDAFAVSDNLCIEMGELFQKYERAAVLFTDYAFHRISQSMDGI EEEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHCCCC RYTIIEVEECGFFFQNERFYRRYEDWITTIRKLNGAIWSATQSLRQIARVANFEILKENI EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH ANWVYLPNGQAKTSPELYKDKFGLTDDQVQLISEAVPNRDYLLITNTQTRMLQTAFSDEM CCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH VAMLRSDGVAQSICDKHHASGGPDWQDRYVREMLARAA HHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]