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The map label for this gene is ccmF [H]

Identifier: 38637882

GI number: 38637882

Start: 234555

End: 236570

Strand: Direct

Name: ccmF [H]

Synonym: PHG218

Alternate gene names: 38637882

Gene position: 234555-236570 (Clockwise)

Preceding gene: 38637881

Following gene: 38637883

Centisome position: 51.87

GC content: 69.64

Gene sequence:

>2016_bases
ATGAATGCCGAACTCGGCCATTTCGCGCTGATCGTGGCCCTGCTGGTCGCGATAGTGCAGGCCGCATTGCCGCTGGCCGG
CGCCGCGCACGGCAACATCGCGTGGATGGCCGTGGCCCGTCCCGCCGCGCGCGTGCAGTGCGTGCTGGTGGCGCTGGCCT
TCGGCTCGCTGACATGGGCCTTCGTCAGCAATGACTTCAGCGTGCGCTACGTGGCGGCGAATGCCAACACCGCCCTGCCG
CTGACCTACCGCATTGCGGCCGTATGGGGCGGGCACGAAGGTTCGATGCTGCTGTGGACGCTGATGCTCGGGCTGTGGTC
GACGGCAGTTTCCTTCTGCAGCCGGCAGCGGCCACTCGCCGTCGTGGCGCGTGTGCTGGGTGTGATGGGCACCATCAGCG
CCGGCTTCCTGCTGTTCCTGCTGTTCGCGTCCAATCCGTTCCTCCGCCTGCTGCCGCCCGCGATGGAAGGCCGCGACCTC
AACCCGCTGCTGCAGGACCCGGGCATGGTGTTTCATCCGCCGCTACTCTATATGGGCTATGTCGGCTTCTCGGTCACCTT
CGCCTTCGCCGTGGCCGCGCTGCTGGCAGGCCGGGCCGACGCCGCTTGGGCACGCTGGTCGCGCCCGTGGACCACGGTGG
CGTGGGCACTGCTGACGCTGGGCATCATGCTCGGCAGTGCCTGGGCGTACTACGAACTCGGCTGGGGCGGCTGGTGGTTC
TGGGATCCGGTCGAGAACGCCTCCTTCATGCCCTGGCTCGCGGGCACCGCGCTGATGCACTCGCTCGCGGTCACAGAGAA
ACGCGGCGCGTTCCGCGCCTGGACGGTGCTGCTCGCCATCTTTACCTTCTCGCTGAGCCTGCTCGGCACTTTCCTGGTCC
GCTCCGGCGTGCTCACCTCGGTGCACGCGTTTGCGGTCGACCCGAAGCGCGGCATCTTCATCCTGGCGCTGCTGGGACTG
GTCACCGGACTGTCGCTGACGCTCTATGGATGGCGCGCGCCGCGGCTTGCACGGCGCGTCGAATTTTCCGTGGCAGCGCG
GGAATCCCTGCTGCTCGCCAACAATGTGCTGCTGGCCGTCGCCGCTGCCACCGTGTTGCTCGGCACGCTCTACCCATTGC
TGCTGGACGTGCTCGGGCTGGGCAAGATCTCGGTCGGCCCGGCGTACTTCGAGCAGGTATTCGTGCCGCTGATGGCGCCC
GCCGTGCTGCTGATGGGCGCCGCGCCGCTGGCGCGCTGGCGGCACGGCGGCCTGCCCGACATGGCGCGACGGCTGCGCTG
GGCGGCGGCGGCCAGCATCGTCGTCGGACTCGGCCTGTTGCTGGTTCAGCGCAACGCGTCGGCGCTCGCAGGGCTGGGGC
TGGTGCTGGCGGCCTGGTGCGGGCTCAGCGCCGTGGCCAGCCTGTCTACGCGCCTGCGGAACCAGCAAGGCCGGCGCCTG
GCCGCCTTGCGCCAGCTGCCCGCGAGCTATTGGGGCATGCTGCTGTCGCACGCGGGCGTGGGCGTCTTCATCGCCGGCGT
GACGCTGGTGTCGAGCCAGGAGAGCCTGCGCGAACTGCCCATGCGCGTGGGCCACAACATCAGCGTTGGCGGCTATAGCT
TCCGCTTCGACGGCGTGACGCAGGCGGCGGGCCCCAACTACGATGCGCTGCGCGGAACGCTGTCCGTGTCCCGCCACGGC
AAGATCGTCGCCGTCCTCGCCCCGGAACGCCGCATCTACCGCAGCCAGGACATGCCCACCACCGAAGCCGCCATCGACAG
CGGCCTGACCCGCGATCTCTACGTCGCGCTGGGCGAGGGCGTGGGCGATGGCGGCTGGGCGGTGCGCATCCACGTCAAGC
CGTTCGTCGACTGGATCTGGGCCGGGTGCATCCTGATGGCGCTGGGCGGCTTGCTTGCCGTCTGCGACAAACGCTACCGC
CTGCGTCGGCGCGCCCCGGCTCCACAGGCCGAAACAGTCGATGCGCCGAAGGCACCGGCACTGGCGCTTTCCACCGCCGA
GGAGACGCGGGCATGA

Upstream 100 bases:

>100_bases
AGCATGATGAGAACTACATGCCGCCCGAGGCCGCCGACGCGCTGAAGCAGGCCGAGCAGGTCAACCGCCGCATGGCCGGG
ACCCCGCAAGGAGCGCGGCA

Downstream 100 bases:

>100_bases
CGCGCTTCCTGCTGCCGCTCGCGGCTTTCCTCGCACTGACCATCGCCCTGGCGGCCGGGCTGCGGCACGATCCGCGCGAA
CTGCCCTCGCCGCTGGTCGG

Product: cytochrome C-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 671; Mature: 671

Protein sequence:

>671_residues
MNAELGHFALIVALLVAIVQAALPLAGAAHGNIAWMAVARPAARVQCVLVALAFGSLTWAFVSNDFSVRYVAANANTALP
LTYRIAAVWGGHEGSMLLWTLMLGLWSTAVSFCSRQRPLAVVARVLGVMGTISAGFLLFLLFASNPFLRLLPPAMEGRDL
NPLLQDPGMVFHPPLLYMGYVGFSVTFAFAVAALLAGRADAAWARWSRPWTTVAWALLTLGIMLGSAWAYYELGWGGWWF
WDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTVLLAIFTFSLSLLGTFLVRSGVLTSVHAFAVDPKRGIFILALLGL
VTGLSLTLYGWRAPRLARRVEFSVAARESLLLANNVLLAVAAATVLLGTLYPLLLDVLGLGKISVGPAYFEQVFVPLMAP
AVLLMGAAPLARWRHGGLPDMARRLRWAAAASIVVGLGLLLVQRNASALAGLGLVLAAWCGLSAVASLSTRLRNQQGRRL
AALRQLPASYWGMLLSHAGVGVFIAGVTLVSSQESLRELPMRVGHNISVGGYSFRFDGVTQAAGPNYDALRGTLSVSRHG
KIVAVLAPERRIYRSQDMPTTEAAIDSGLTRDLYVALGEGVGDGGWAVRIHVKPFVDWIWAGCILMALGGLLAVCDKRYR
LRRRAPAPQAETVDAPKAPALALSTAEETRA

Sequences:

>Translated_671_residues
MNAELGHFALIVALLVAIVQAALPLAGAAHGNIAWMAVARPAARVQCVLVALAFGSLTWAFVSNDFSVRYVAANANTALP
LTYRIAAVWGGHEGSMLLWTLMLGLWSTAVSFCSRQRPLAVVARVLGVMGTISAGFLLFLLFASNPFLRLLPPAMEGRDL
NPLLQDPGMVFHPPLLYMGYVGFSVTFAFAVAALLAGRADAAWARWSRPWTTVAWALLTLGIMLGSAWAYYELGWGGWWF
WDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTVLLAIFTFSLSLLGTFLVRSGVLTSVHAFAVDPKRGIFILALLGL
VTGLSLTLYGWRAPRLARRVEFSVAARESLLLANNVLLAVAAATVLLGTLYPLLLDVLGLGKISVGPAYFEQVFVPLMAP
AVLLMGAAPLARWRHGGLPDMARRLRWAAAASIVVGLGLLLVQRNASALAGLGLVLAAWCGLSAVASLSTRLRNQQGRRL
AALRQLPASYWGMLLSHAGVGVFIAGVTLVSSQESLRELPMRVGHNISVGGYSFRFDGVTQAAGPNYDALRGTLSVSRHG
KIVAVLAPERRIYRSQDMPTTEAAIDSGLTRDLYVALGEGVGDGGWAVRIHVKPFVDWIWAGCILMALGGLLAVCDKRYR
LRRRAPAPQAETVDAPKAPALALSTAEETRA
>Mature_671_residues
MNAELGHFALIVALLVAIVQAALPLAGAAHGNIAWMAVARPAARVQCVLVALAFGSLTWAFVSNDFSVRYVAANANTALP
LTYRIAAVWGGHEGSMLLWTLMLGLWSTAVSFCSRQRPLAVVARVLGVMGTISAGFLLFLLFASNPFLRLLPPAMEGRDL
NPLLQDPGMVFHPPLLYMGYVGFSVTFAFAVAALLAGRADAAWARWSRPWTTVAWALLTLGIMLGSAWAYYELGWGGWWF
WDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTVLLAIFTFSLSLLGTFLVRSGVLTSVHAFAVDPKRGIFILALLGL
VTGLSLTLYGWRAPRLARRVEFSVAARESLLLANNVLLAVAAATVLLGTLYPLLLDVLGLGKISVGPAYFEQVFVPLMAP
AVLLMGAAPLARWRHGGLPDMARRLRWAAAASIVVGLGLLLVQRNASALAGLGLVLAAWCGLSAVASLSTRLRNQQGRRL
AALRQLPASYWGMLLSHAGVGVFIAGVTLVSSQESLRELPMRVGHNISVGGYSFRFDGVTQAAGPNYDALRGTLSVSRHG
KIVAVLAPERRIYRSQDMPTTEAAIDSGLTRDLYVALGEGVGDGGWAVRIHVKPFVDWIWAGCILMALGGLLAVCDKRYR
LRRRAPAPQAETVDAPKAPALALSTAEETRA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=659, Percent_Identity=52.8072837632777, Blast_Score=614, Evalue=1e-177,
Organism=Escherichia coli, GI1790511, Length=343, Percent_Identity=51.6034985422741, Blast_Score=312, Evalue=5e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71981; Mature: 71981

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAELGHFALIVALLVAIVQAALPLAGAAHGNIAWMAVARPAARVQCVLVALAFGSLTWA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHEEEE
FVSNDFSVRYVAANANTALPLTYRIAAVWGGHEGSMLLWTLMLGLWSTAVSFCSRQRPLA
EECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
VVARVLGVMGTISAGFLLFLLFASNPFLRLLPPAMEGRDLNPLLQDPGMVFHPPLLYMGY
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHCCCCEECCHHHHHHH
VGFSVTFAFAVAALLAGRADAAWARWSRPWTTVAWALLTLGIMLGSAWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
WDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTVLLAIFTFSLSLLGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
VHAFAVDPKRGIFILALLGLVTGLSLTLYGWRAPRLARRVEFSVAARESLLLANNVLLAV
HHHEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAATVLLGTLYPLLLDVLGLGKISVGPAYFEQVFVPLMAPAVLLMGAAPLARWRHGGLPD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHH
MARRLRWAAAASIVVGLGLLLVQRNASALAGLGLVLAAWCGLSAVASLSTRLRNQQGRRL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AALRQLPASYWGMLLSHAGVGVFIAGVTLVSSQESLRELPMRVGHNISVGGYSFRFDGVT
HHHHHCHHHHHHHHHHHCCCCEEEHHHHHHCCHHHHHHHHHHHCCCEEECCEEEEECCCC
QAAGPNYDALRGTLSVSRHGKIVAVLAPERRIYRSQDMPTTEAAIDSGLTRDLYVALGEG
CCCCCCHHHHHHHHEECCCCCEEEEECCCHHHHHCCCCCHHHHHHHCCCCHHHHHHCCCC
VGDGGWAVRIHVKPFVDWIWAGCILMALGGLLAVCDKRYRLRRRAPAPQAETVDAPKAPA
CCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LALSTAEETRA
EEEECHHHHCC
>Mature Secondary Structure
MNAELGHFALIVALLVAIVQAALPLAGAAHGNIAWMAVARPAARVQCVLVALAFGSLTWA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHEEEE
FVSNDFSVRYVAANANTALPLTYRIAAVWGGHEGSMLLWTLMLGLWSTAVSFCSRQRPLA
EECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
VVARVLGVMGTISAGFLLFLLFASNPFLRLLPPAMEGRDLNPLLQDPGMVFHPPLLYMGY
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHCCCCEECCHHHHHHH
VGFSVTFAFAVAALLAGRADAAWARWSRPWTTVAWALLTLGIMLGSAWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
WDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTVLLAIFTFSLSLLGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
VHAFAVDPKRGIFILALLGLVTGLSLTLYGWRAPRLARRVEFSVAARESLLLANNVLLAV
HHHEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAATVLLGTLYPLLLDVLGLGKISVGPAYFEQVFVPLMAPAVLLMGAAPLARWRHGGLPD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHH
MARRLRWAAAASIVVGLGLLLVQRNASALAGLGLVLAAWCGLSAVASLSTRLRNQQGRRL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AALRQLPASYWGMLLSHAGVGVFIAGVTLVSSQESLRELPMRVGHNISVGGYSFRFDGVT
HHHHHCHHHHHHHHHHHCCCCEEEHHHHHHCCHHHHHHHHHHHCCCEEECCEEEEECCCC
QAAGPNYDALRGTLSVSRHGKIVAVLAPERRIYRSQDMPTTEAAIDSGLTRDLYVALGEG
CCCCCCHHHHHHHHEECCCCCEEEEECCCHHHHHCCCCCHHHHHHHCCCCHHHHHHCCCC
VGDGGWAVRIHVKPFVDWIWAGCILMALGGLLAVCDKRYRLRRRAPAPQAETVDAPKAPA
CCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LALSTAEETRA
EEEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]