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The map label for this gene is xerD [C]

Identifier: 38637723

GI number: 38637723

Start: 53711

End: 54721

Strand: Direct

Name: xerD [C]

Synonym: PHG058

Alternate gene names: 38637723

Gene position: 53711-54721 (Clockwise)

Preceding gene: 38637722

Following gene: 38637729

Centisome position: 11.88

GC content: 59.35

Gene sequence:

>1011_bases
ATGAAACCGACGGATTTCTCCATGCTCGTGACCAGCTTCCTGACGCACCATCTGGCCGCACAGCGCAACCTGAGCCCCAA
CACGATCAAGGCCTATCGCGACGTGTTCACCCTGCTGCTGCGATACTGTCGTGACGTGCGGGGAATCGCACTGGAGCGTC
TGTCTCTGGCACAGATCGACGTAGGCCTGGTCGAGGCATTCCTTGATCACCTGGCCAACGACCGGCATGTTTCGGTCAGC
ACGCAGAATCATCGCCTCGCGGCATTGCACGCGTTCTTCCGCTACGTACAGTCGGAAGTACCCGAGCGCCTGCTGCAGTG
TCAGCAGGTCCTCGCGATTCCGCTGCGGCGACAGCCGCGCGCCAGCGTCGGTTATCTCCCCAAGGAATACCTTGCACAGC
TTCTCGCACAACCGGACCTGCGTACGTCTGAGGGCTGCCGCGATGCAGTGATGTTGAGCGTACTCTATGACACCGGCGCC
CGGGTACAGGAGTTGATTGACCTGAACGCCGGGGACGTGCGGCTGGATCCTCCAGCGCAGGTGCGGCTCATGGGAAAGGG
TCGAAAGCCGCGCGCCGTGCCCTTGATGGACTCGACAGTCGAACTGCTGCTCCAGTATCGACGCGATAATCACCTCGATC
GTCCTGAATACGCCGACAAGCCACTCTTCCAGAACCGGCAAGGTACACGGTTATCGCGCTCGGGTGTTCGCTATCTCCTG
CAAAAGTATGTGATTCCCGTACGGCGAAGTCACCCCGACTTCACGCAGCGGGTAAGTCCTCACAGTTTGAGGCACACCAA
GGGAATGCACCTGCTGCAGAGTGGCGTACCGCTCGAGATCATCCGCGACTTCCTCGGTCACGTCGATGTGAAGACAACCG
AGATTTATGCTCGCGCAAATCTTGAGATGAAGCGCAAGGCCCTCGAAAAAGCCACCGACGGTGCGTCGCTTCCAAAGATC
CCGTCCTGGCAGCAGAACAAAGCGCTTCTCGAGTGGCTGCATTCACTGTAG

Upstream 100 bases:

>100_bases
GAACGCAGCGCTACCTGCATCTGATTGCCGAACTGTTTCCGGAGATCACGGCACGTACCGGCGCCGCCTTTGGTGATGTC
ATCCCGCGGAGGAACGGATC

Downstream 100 bases:

>100_bases
GACTGCGGAGGTTGCGCACGCTGTTTGTTGGCTGCGGGCCTCCCCATCTTGCCCAACTTTTATGTAGAGTTTCTACGAGC
GGAGACCTTTGCTATCGCGG

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MKPTDFSMLVTSFLTHHLAAQRNLSPNTIKAYRDVFTLLLRYCRDVRGIALERLSLAQIDVGLVEAFLDHLANDRHVSVS
TQNHRLAALHAFFRYVQSEVPERLLQCQQVLAIPLRRQPRASVGYLPKEYLAQLLAQPDLRTSEGCRDAVMLSVLYDTGA
RVQELIDLNAGDVRLDPPAQVRLMGKGRKPRAVPLMDSTVELLLQYRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLL
QKYVIPVRRSHPDFTQRVSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARANLEMKRKALEKATDGASLPKI
PSWQQNKALLEWLHSL

Sequences:

>Translated_336_residues
MKPTDFSMLVTSFLTHHLAAQRNLSPNTIKAYRDVFTLLLRYCRDVRGIALERLSLAQIDVGLVEAFLDHLANDRHVSVS
TQNHRLAALHAFFRYVQSEVPERLLQCQQVLAIPLRRQPRASVGYLPKEYLAQLLAQPDLRTSEGCRDAVMLSVLYDTGA
RVQELIDLNAGDVRLDPPAQVRLMGKGRKPRAVPLMDSTVELLLQYRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLL
QKYVIPVRRSHPDFTQRVSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARANLEMKRKALEKATDGASLPKI
PSWQQNKALLEWLHSL
>Mature_336_residues
MKPTDFSMLVTSFLTHHLAAQRNLSPNTIKAYRDVFTLLLRYCRDVRGIALERLSLAQIDVGLVEAFLDHLANDRHVSVS
TQNHRLAALHAFFRYVQSEVPERLLQCQQVLAIPLRRQPRASVGYLPKEYLAQLLAQPDLRTSEGCRDAVMLSVLYDTGA
RVQELIDLNAGDVRLDPPAQVRLMGKGRKPRAVPLMDSTVELLLQYRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLL
QKYVIPVRRSHPDFTQRVSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARANLEMKRKALEKATDGASLPKI
PSWQQNKALLEWLHSL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=293, Percent_Identity=29.6928327645051, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1790244, Length=303, Percent_Identity=27.0627062706271, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38456; Mature: 38456

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPTDFSMLVTSFLTHHLAAQRNLSPNTIKAYRDVFTLLLRYCRDVRGIALERLSLAQID
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGLVEAFLDHLANDRHVSVSTQNHRLAALHAFFRYVQSEVPERLLQCQQVLAIPLRRQPR
HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ASVGYLPKEYLAQLLAQPDLRTSEGCRDAVMLSVLYDTGARVQELIDLNAGDVRLDPPAQ
CCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEECCCHH
VRLMGKGRKPRAVPLMDSTVELLLQYRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLL
EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
QKYVIPVRRSHPDFTQRVSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARAN
HHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCC
LEMKRKALEKATDGASLPKIPSWQQNKALLEWLHSL
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKPTDFSMLVTSFLTHHLAAQRNLSPNTIKAYRDVFTLLLRYCRDVRGIALERLSLAQID
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGLVEAFLDHLANDRHVSVSTQNHRLAALHAFFRYVQSEVPERLLQCQQVLAIPLRRQPR
HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ASVGYLPKEYLAQLLAQPDLRTSEGCRDAVMLSVLYDTGARVQELIDLNAGDVRLDPPAQ
CCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEECCCHH
VRLMGKGRKPRAVPLMDSTVELLLQYRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLL
EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
QKYVIPVRRSHPDFTQRVSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARAN
HHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCC
LEMKRKALEKATDGASLPKIPSWQQNKALLEWLHSL
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]