| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
Click here to switch to the map view.
The map label for this gene is 37681358
Identifier: 37681358
GI number: 37681358
Start: 3257114
End: 3257647
Strand: Direct
Name: 37681358
Synonym: VV3174
Alternate gene names: NA
Gene position: 3257114-3257647 (Clockwise)
Preceding gene: 37681357
Following gene: 37681359
Centisome position: 97.1
GC content: 46.25
Gene sequence:
>534_bases ATGGGGCTTGATAACGTCGATGTCTGGTTTCAAGATGAAGCAAGATTTGGCCAGCAAAACACGACAACTCGACTTTGGGC TGAGCGTGGCTCAAGACCAAGAGTGGTAAAACAGCAGCAGTTTGAATATGCGTATTTGTTTGGCTCAGTATGCCCCGCTA GAGGTATTGGTGAGGCAATGGTCGTTCCTTGGGTTAACAAAAACATTATGGTTGAGCATCTGAAGCAACTCTCCGCGGTG ACCGAAAAAGGTCGTCACGCAGTGGTCATTATGGATGGCGCGGGTTGGCATACAAATGACATTGCTGAGCCATTTGATAA TGTCAGTATCATCAAGCTCCCACCCTATTCACCAGAGCTAAACCCGATAGAACAAGTGTGGAGTTGGTTAAGACAACACT ATCTCGCCAATCAATCTTTTGCGGATTACGAAGACATTGTCTCCAAAGTATGTAGGGCTTGGAATAGTTTTTTGGAATGT TCGGCCAGAGTCAGACAGATGTGCTCGAGAAGCTGGATAGACCTGACCAGTTAA
Upstream 100 bases:
>100_bases TGGATAACTTCACGCTCCAAGCACTCTCGTCAATCCCAGCAAATCCAAGACGATTTTAAAAAAATTCAAAATTGAAACGA TCCTTAAGATCCCCGGCCAC
Downstream 100 bases:
>100_bases TTTTCCAGATTGGTATAACCAGTTATTTTTCAAGATTGATATCAGTGACAGACAAAATCTCAGATGTGAAAAAACCCTAG TATTTCTACTAGGGCTTTGC
Product: transposase and inactivated derivative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MGLDNVDVWFQDEARFGQQNTTTRLWAERGSRPRVVKQQQFEYAYLFGSVCPARGIGEAMVVPWVNKNIMVEHLKQLSAV TEKGRHAVVIMDGAGWHTNDIAEPFDNVSIIKLPPYSPELNPIEQVWSWLRQHYLANQSFADYEDIVSKVCRAWNSFLEC SARVRQMCSRSWIDLTS
Sequences:
>Translated_177_residues MGLDNVDVWFQDEARFGQQNTTTRLWAERGSRPRVVKQQQFEYAYLFGSVCPARGIGEAMVVPWVNKNIMVEHLKQLSAV TEKGRHAVVIMDGAGWHTNDIAEPFDNVSIIKLPPYSPELNPIEQVWSWLRQHYLANQSFADYEDIVSKVCRAWNSFLEC SARVRQMCSRSWIDLTS >Mature_176_residues GLDNVDVWFQDEARFGQQNTTTRLWAERGSRPRVVKQQQFEYAYLFGSVCPARGIGEAMVVPWVNKNIMVEHLKQLSAVT EKGRHAVVIMDGAGWHTNDIAEPFDNVSIIKLPPYSPELNPIEQVWSWLRQHYLANQSFADYEDIVSKVCRAWNSFLECS ARVRQMCSRSWIDLTS
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20408; Mature: 20277
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLDNVDVWFQDEARFGQQNTTTRLWAERGSRPRVVKQQQFEYAYLFGSVCPARGIGEAM CCCCCCEEEECCHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE VVPWVNKNIMVEHLKQLSAVTEKGRHAVVIMDGAGWHTNDIAEPFDNVSIIKLPPYSPEL EECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCC NPIEQVWSWLRQHYLANQSFADYEDIVSKVCRAWNSFLECSARVRQMCSRSWIDLTS CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure GLDNVDVWFQDEARFGQQNTTTRLWAERGSRPRVVKQQQFEYAYLFGSVCPARGIGEAM CCCCCEEEECCHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE VVPWVNKNIMVEHLKQLSAVTEKGRHAVVIMDGAGWHTNDIAEPFDNVSIIKLPPYSPEL EECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCC NPIEQVWSWLRQHYLANQSFADYEDIVSKVCRAWNSFLECSARVRQMCSRSWIDLTS CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]