Click here to switch to the map view.

The map label for this gene is yjbQ [H]

Identifier: 37681160

GI number: 37681160

Start: 3053740

End: 3054159

Strand: Direct

Name: yjbQ [H]

Synonym: VV2976

Alternate gene names: 37681160

Gene position: 3053740-3054159 (Clockwise)

Preceding gene: 37681158

Following gene: 37681164

Centisome position: 91.03

GC content: 44.52

Gene sequence:

>420_bases
ATGTGGTATCAGAAGTGTTTAACCCTACCCGTCCGAAAGCGTGGCTTTCATCTGATCACTGATGAAATTGAACAACAATT
ACCAGAACTATCAAAATTATCCGTTGGTTTGTTACATCTTTTTATCCAACATACCTCAGCCAGTTTGACCATCAATGAGA
ACGCAGACCCCACCGTTCGACATGATATGGAGCAACACTTTAATCGCTTTGTTCCTGAAAGGGCCCCTTACTATCAGCAT
GATTATGAAGGCGATGATGATATGCCCGCCCACATAAAAGCCTCAACATTAGGATGCCATCTCACTATTCCAATCTCTCA
GGGGCGTTTAGCGTTAGGTACTTGGCAAGGGATCTACTTAGGCGAACATCGAGATCATGGTGGACAACGTCGTATAGTGG
CCACGCTCTATGGGGAATAA

Upstream 100 bases:

>100_bases
TAGCATAATGGCTCACTATAGTGTGTTGTCTCTCTAATACGCTGCAACCAAAGATAGCGTTGAATTATCCATTTGCCAAA
TAGATTATAAGGAATGAGAT

Downstream 100 bases:

>100_bases
AAAACAAGCCGAGCAAATAGCTCGGCTTGAGTGATGATAAGGTGTGGCAAACGTTAAAACGGCTGATTGACCATGACACG
AAAAAGGCTCTCTTCACTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MWYQKCLTLPVRKRGFHLITDEIEQQLPELSKLSVGLLHLFIQHTSASLTINENADPTVRHDMEQHFNRFVPERAPYYQH
DYEGDDDMPAHIKASTLGCHLTIPISQGRLALGTWQGIYLGEHRDHGGQRRIVATLYGE

Sequences:

>Translated_139_residues
MWYQKCLTLPVRKRGFHLITDEIEQQLPELSKLSVGLLHLFIQHTSASLTINENADPTVRHDMEQHFNRFVPERAPYYQH
DYEGDDDMPAHIKASTLGCHLTIPISQGRLALGTWQGIYLGEHRDHGGQRRIVATLYGE
>Mature_139_residues
MWYQKCLTLPVRKRGFHLITDEIEQQLPELSKLSVGLLHLFIQHTSASLTINENADPTVRHDMEQHFNRFVPERAPYYQH
DYEGDDDMPAHIKASTLGCHLTIPISQGRLALGTWQGIYLGEHRDHGGQRRIVATLYGE

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=139, Percent_Identity=64.7482014388489, Blast_Score=196, Evalue=6e-52,
Organism=Drosophila melanogaster, GI221476594, Length=137, Percent_Identity=56.9343065693431, Blast_Score=165, Evalue=7e-42,
Organism=Drosophila melanogaster, GI221476589, Length=137, Percent_Identity=56.9343065693431, Blast_Score=164, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 15988; Mature: 15988

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWYQKCLTLPVRKRGFHLITDEIEQQLPELSKLSVGLLHLFIQHTSASLTINENADPTVR
CCCHHHCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
HDMEQHFNRFVPERAPYYQHDYEGDDDMPAHIKASTLGCHLTIPISQGRLALGTWQGIYL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEECCCEEEEEECCEEEE
GEHRDHGGQRRIVATLYGE
CCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MWYQKCLTLPVRKRGFHLITDEIEQQLPELSKLSVGLLHLFIQHTSASLTINENADPTVR
CCCHHHCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
HDMEQHFNRFVPERAPYYQHDYEGDDDMPAHIKASTLGCHLTIPISQGRLALGTWQGIYL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEECCCEEEEEECCEEEE
GEHRDHGGQRRIVATLYGE
CCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]