| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is metK [H]
Identifier: 37681047
GI number: 37681047
Start: 2919395
End: 2920549
Strand: Direct
Name: metK [H]
Synonym: VV2863
Alternate gene names: 37681047
Gene position: 2919395-2920549 (Clockwise)
Preceding gene: 37681045
Following gene: 37681048
Centisome position: 87.03
GC content: 47.19
Gene sequence:
>1155_bases ATGGCTAAGCACCTGTTTACTTCTGAGTCGGTTTCAGAAGGTCATCCAGATAAAATTGCAGACCAGATTTCTGATGCGGT TCTTGATGCGATTCTTGAACAAGACCCAAAAGCGCGTGTTGCATGTGAAACGTACGTAAAAACTGGCATGGTAATGGTTG GTGGTGAAATCACCACTTCAGCATGGGTTGATATCGAAGAGTTAACTCGTGAAACGGTGCGTGAAATTGGTTATGTACAT TCAGATATGGGTTTCGATGCAAACTCATGTGCAGTACTGAACACTATCGGTAAACAGTCTCCAGACATCAACCAAGGTGT TGATAAAGCCGATCCTAAAGAGCAAGGCGCGGGCGACCAAGGCATCATGTTCGGTTACGCATGTAACGAAACTGAAGTCC TTATGCCAGCACCAATCACTTACGCTCACCGTTTGATGGAGCGTCAAGCGAAAGTTCGTAAAGATGGCACACTGCCATGG TTGCGTCCTGATGCAAAATCACAGGTTACTTTCCAATACGAGCAAGGCAAAATTGTTGGCATTGATGCGGTTGTTCTTTC AACTCAGCACTGCGATTCTATTTCCACACCGGATCTTCGCGAAGCGGTTATGGAAGAGATCATCAAGCCAGTTCTTCCTT CTGAATGGCTAAACAAAGAAACAAAATACTTCATCAACCCAACTGGCCGTTTCGTTATCGGTGGTCCAATGGGTGACTGT GGTTTGACTGGTCGTAAGATCATCGTTGATACCTACGGCGGCGCAGCTCGTCACGGTGGTGGTGCTTTCTCTGGTAAAGA TCCATCGAAAGTAGACCGTTCAGCTGCTTACGCAGCACGTTACGTAGCGAAAAACATCGTCGCGGCGGGTATGGCAGATC GCTGTGAAATCCAACTGTCTTACGCAATCGGTGTTGCTGATCCAACCTCTATCATGGTGGAAACATTCGGTACTGAGAAA GTATCACACGACATCATCATTGAAGCGGTACGTCAGTTCTTCGACCTACGTCCATACGGTCTACAAGAGATGCTGAATCT ACTTCAGCCAATCTACAAGAAGACCGCAGCATACGGTCACTTCGGTCGCGAAGAGTTCCCATGGGAAGCGACTGACAAAG CAGCACTACTGCGCGAGTTTGCTGGTATCAAGTAA
Upstream 100 bases:
>100_bases TAGACGTCTAGATGTAGAAACACCTACAAAAATTATTGTATTTCCTACTGCTGGAGCATGCATTCTCACAGCAGAATAGA TTAATAAAAGTGGAGCTCTC
Downstream 100 bases:
>100_bases GATAACCTCACCTCATTTTCTAAAGCCTTCGCTCAATGCGAAGGCTTTTTCATTTGTGCGACGAAAAATTCGCCACGGCA TTTGTATTTTTAACTAACTC
Product: S-adenosylmethionine synthetase
Products: NA
Alternate protein names: AdoMet synthase; MAT; Methionine adenosyltransferase [H]
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEELTRETVREIGYVH SDMGFDANSCAVLNTIGKQSPDINQGVDKADPKEQGAGDQGIMFGYACNETEVLMPAPITYAHRLMERQAKVRKDGTLPW LRPDAKSQVTFQYEQGKIVGIDAVVLSTQHCDSISTPDLREAVMEEIIKPVLPSEWLNKETKYFINPTGRFVIGGPMGDC GLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRCEIQLSYAIGVADPTSIMVETFGTEK VSHDIIIEAVRQFFDLRPYGLQEMLNLLQPIYKKTAAYGHFGREEFPWEATDKAALLREFAGIK
Sequences:
>Translated_384_residues MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEELTRETVREIGYVH SDMGFDANSCAVLNTIGKQSPDINQGVDKADPKEQGAGDQGIMFGYACNETEVLMPAPITYAHRLMERQAKVRKDGTLPW LRPDAKSQVTFQYEQGKIVGIDAVVLSTQHCDSISTPDLREAVMEEIIKPVLPSEWLNKETKYFINPTGRFVIGGPMGDC GLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRCEIQLSYAIGVADPTSIMVETFGTEK VSHDIIIEAVRQFFDLRPYGLQEMLNLLQPIYKKTAAYGHFGREEFPWEATDKAALLREFAGIK >Mature_383_residues AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEELTRETVREIGYVHS DMGFDANSCAVLNTIGKQSPDINQGVDKADPKEQGAGDQGIMFGYACNETEVLMPAPITYAHRLMERQAKVRKDGTLPWL RPDAKSQVTFQYEQGKIVGIDAVVLSTQHCDSISTPDLREAVMEEIIKPVLPSEWLNKETKYFINPTGRFVIGGPMGDCG LTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRCEIQLSYAIGVADPTSIMVETFGTEKV SHDIIIEAVRQFFDLRPYGLQEMLNLLQPIYKKTAAYGHFGREEFPWEATDKAALLREFAGIK
Specific function: Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the e
COG id: COG0192
COG function: function code H; S-adenosylmethionine synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AdoMet synthase family [H]
Homologues:
Organism=Homo sapiens, GI5174529, Length=374, Percent_Identity=56.1497326203209, Blast_Score=410, Evalue=1e-115, Organism=Homo sapiens, GI4557737, Length=374, Percent_Identity=56.4171122994652, Blast_Score=408, Evalue=1e-114, Organism=Escherichia coli, GI1789311, Length=384, Percent_Identity=85.9375, Blast_Score=695, Evalue=0.0, Organism=Caenorhabditis elegans, GI17551082, Length=373, Percent_Identity=55.2278820375335, Blast_Score=404, Evalue=1e-113, Organism=Caenorhabditis elegans, GI17538498, Length=373, Percent_Identity=56.8364611260054, Blast_Score=403, Evalue=1e-113, Organism=Caenorhabditis elegans, GI17538494, Length=373, Percent_Identity=56.5683646112601, Blast_Score=401, Evalue=1e-112, Organism=Caenorhabditis elegans, GI25145633, Length=384, Percent_Identity=54.9479166666667, Blast_Score=397, Evalue=1e-111, Organism=Caenorhabditis elegans, GI32565905, Length=373, Percent_Identity=50.6702412868633, Blast_Score=338, Evalue=2e-93, Organism=Caenorhabditis elegans, GI32565911, Length=326, Percent_Identity=53.3742331288344, Blast_Score=328, Evalue=3e-90, Organism=Caenorhabditis elegans, GI25145635, Length=337, Percent_Identity=51.3353115727003, Blast_Score=323, Evalue=1e-88, Organism=Caenorhabditis elegans, GI32565903, Length=299, Percent_Identity=52.8428093645485, Blast_Score=295, Evalue=3e-80, Organism=Caenorhabditis elegans, GI32565909, Length=83, Percent_Identity=65.0602409638554, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI32565907, Length=46, Percent_Identity=73.9130434782609, Blast_Score=73, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6320710, Length=374, Percent_Identity=58.8235294117647, Blast_Score=420, Evalue=1e-118, Organism=Saccharomyces cerevisiae, GI6323209, Length=370, Percent_Identity=58.3783783783784, Blast_Score=413, Evalue=1e-116, Organism=Drosophila melanogaster, GI45552159, Length=373, Percent_Identity=55.7640750670241, Blast_Score=384, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580529, Length=373, Percent_Identity=55.7640750670241, Blast_Score=384, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580537, Length=373, Percent_Identity=55.7640750670241, Blast_Score=384, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580533, Length=373, Percent_Identity=55.7640750670241, Blast_Score=384, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580535, Length=373, Percent_Identity=55.7640750670241, Blast_Score=384, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580531, Length=373, Percent_Identity=55.7640750670241, Blast_Score=384, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580527, Length=373, Percent_Identity=55.2278820375335, Blast_Score=379, Evalue=1e-105, Organism=Drosophila melanogaster, GI24580525, Length=373, Percent_Identity=55.2278820375335, Blast_Score=379, Evalue=1e-105, Organism=Drosophila melanogaster, GI24580541, Length=372, Percent_Identity=52.9569892473118, Blast_Score=356, Evalue=2e-98, Organism=Drosophila melanogaster, GI24580539, Length=120, Percent_Identity=56.6666666666667, Blast_Score=130, Evalue=1e-30,
Paralogues:
None
Copy number: 7,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022631 - InterPro: IPR022630 - InterPro: IPR022629 - InterPro: IPR022628 - InterPro: IPR002133 - InterPro: IPR022636 [H]
Pfam domain/function: PF02773 S-AdoMet_synt_C; PF02772 S-AdoMet_synt_M; PF00438 S-AdoMet_synt_N [H]
EC number: =2.5.1.6 [H]
Molecular weight: Translated: 42092; Mature: 41961
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS00376 ADOMET_SYNTHETASE_1 ; PS00377 ADOMET_SYNTHETASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTS CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEECCEECCH AWVDIEELTRETVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVDKADPKEQGAGDQ HCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHCCCCCCCCHHHCCCCC GIMFGYACNETEVLMPAPITYAHRLMERQAKVRKDGTLPWLRPDAKSQVTFQYEQGKIVG CEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEE IDAVVLSTQHCDSISTPDLREAVMEEIIKPVLPSEWLNKETKYFINPTGRFVIGGPMGDC EEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCEEEECCCCCEEECCCCCCC GLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRCEIQLS CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE YAIGVADPTSIMVETFGTEKVSHDIIIEAVRQFFDLRPYGLQEMLNLLQPIYKKTAAYGH EEEECCCCHHHHEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC FGREEFPWEATDKAALLREFAGIK CCCCCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTS CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEECCEECCH AWVDIEELTRETVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVDKADPKEQGAGDQ HCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHCCCCCCCCHHHCCCCC GIMFGYACNETEVLMPAPITYAHRLMERQAKVRKDGTLPWLRPDAKSQVTFQYEQGKIVG CEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEE IDAVVLSTQHCDSISTPDLREAVMEEIIKPVLPSEWLNKETKYFINPTGRFVIGGPMGDC EEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCEEEECCCCCEEECCCCCCC GLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRCEIQLS CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE YAIGVADPTSIMVETFGTEKVSHDIIIEAVRQFFDLRPYGLQEMLNLLQPIYKKTAAYGH EEEECCCCHHHHEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC FGREEFPWEATDKAALLREFAGIK CCCCCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA