| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
Click here to switch to the map view.
The map label for this gene is prc [H]
Identifier: 37679831
GI number: 37679831
Start: 1696809
End: 1698809
Strand: Direct
Name: prc [H]
Synonym: VV1647
Alternate gene names: 37679831
Gene position: 1696809-1698809 (Clockwise)
Preceding gene: 37679830
Following gene: 37679832
Centisome position: 50.58
GC content: 43.18
Gene sequence:
>2001_bases ATGAAATGCCGTTCAAAAGTGACTCTGATTGCTGCTAGCCTTTGGCTAGCAGCGTCAGCTCAGGCTCTAGAAGCCAAACT ATCAGAAAAAGATCTCCCTTTACTTGCACCTGAAGTTCAACACGAAACTGCAAGCAAAAGGGTCACTTCTCGTTTTACTC GTTCTCATTACAAGCATTTTAATTTCAACGATGATTTCTCTCGTGCGATGTTTAATCGCTATATAGAAATGCTTGATTAC AATAAGAATATCTTCACCCAAGCAGACATTGATTCATTTGAAAAGTGGTCAACAGAGTTGGATGACCAACTCAAAGAAGG CAACAATCAAATCGCGTTTGATGTTTACAATCTCTCAATGAAAAAGCGTTTTGAGCGATTCTCTTATGCTCTCAAACTGC TCGATCAAGAAATCACCTTTGATACGGATGATGAGATTGAACTCGATCGCACTGATGCGGCTTGGCCAAAGGACCAAACC GAGCTTAATGAACTGTGGCGTCAGCGAGTAAAATACGATGCGCTGAACCTCAAGTTGACTGGCAAAGATTGGCCAGAAAT TAAAGAAATTCTAGAAAAACGTTATAACAACGCGATGAAGAGAATTACTCAAACGCGCAACGAAGACGTTTTTCAACTTT ACATGAACGCGTTTGCACGCGAAGTGGATCCTCATACCAGTTATCTTTCACCAAGAAACGCTGAACAATTCCAGTCTGAG ATGAACTTGTCACTGGAAGGCATTGGTGCTGTTTTACAGATGACGGATGATTACACTGTTATCCGTTCTTTGGTTGCTGG TGGCCCTGCGTCTAAAAGTAAACAGTTAGGCGAGGGGGACCGAATCATCGGTGTTGGTCAAGATAAGAAAGACATCGTCG ATGTGATCGGCTGGCGTCTCGATGATGTTGTCCAGTTGATTAAAGGTCCTAAAGGAACCAAAGTTCACCTACAAGTTCTG CCTGAAGGCAAAGATTCTAAGAGTTACGTTGTCACGATTGTGCGTGACAAAATTCGCTTAGAAGACCGAGCAGTGAAGGC AGAGGTGATTGAAAAAGATGGCAAGAAAATCGGCGTTCTAGAAGTACCGAGTTTTTATGTGGGTCTTTCTGCCGACACCG ATAAGCTGCTTACTGATCTCAAAGGTAAGGGTATTGACGGCATCATCGTTGATTTGAGAAACAATGGTGGTGGGGCATTA ACTGAAGCCACTGCGCTCACGGGTTTGTTTATTGAAAAGGGCCCTGTGGTTCAAGTTCGTGACAGTTATGGGCGAGTGAA AGTCAACGCTGATACGGATGGACAAATCAGTTATTCAGGCCCGATGACGGTGTTGGTGAATCGCTATAGTGCATCTGCTT CTGAAATTTTCGCCGCTGCACTACAAGACTATGGCCGCGCCATTATTCTTGGTGAAAACTCATTTGGTAAAGGAACCGTA CAACAGCACCGCTCGCTGAATCATATCTATGATTTGTTTGACAAAGAAATCGGTTATGTTCAGTACACCATCCAAAAATT CTATCGAATTGATGGAGGCAGCACGCAAAATAAAGGTGTCGTGCCAGACATTCCTTTCCCTACCGCGATTGATCCTGAAG AAACAGGTGAGAGTGTTGAAGATAATGCTCTACCTTGGGACAGTATTGAGAAAGCGGATTATCAAGTGTTACAACGTAAT GATTCTTTGATTGAACAATTGCGTGTAAAACACGATGAGCGGATCGCTAACGAGCTAGAGTTTAAGTTTATTGCGGAAGA CATTGCTAAGTACAAAGCAGAGAAAGACGACAATACGCTTTCTTTGAATGAAAAAGTGCGTAAGCAAGAATCTGAACAGG CTGATAAGCAGCGCCTAGATCGCATCAATCAACGCCAAGCATTAGCGGGTAAAGAAGCGTTTAAGACTTTAGACGATGTA CCCAAAGACTATGAAACGCCAGATGCATACCTTGATGAATCTGTTGCCATCATGGTCGACATGCTGAAAAAACCGTCCTA A
Upstream 100 bases:
>100_bases TAGAAATTAATAAGGATGATGTGCGAGTTCAACTGTCTAACGGCCTTCAAATGGTTGTGAAAGCGGAGCACCTTCGCGCA TAAAGGAGACACTCCTACGC
Downstream 100 bases:
>100_bases AAACGGTGTGATGATAAAAAGCGAGCATTAAAGCTCGCTTTTTTCATTCATAGCCCATAGCAAGGTGAAGGAAAGATGAC GTATAGATGAAGTTATTTTT
Product: carboxy-terminal protease
Products: NA
Alternate protein names: C-terminal-processing peptidase; PRC protein; Protease Re [H]
Number of amino acids: Translated: 666; Mature: 666
Protein sequence:
>666_residues MKCRSKVTLIAASLWLAASAQALEAKLSEKDLPLLAPEVQHETASKRVTSRFTRSHYKHFNFNDDFSRAMFNRYIEMLDY NKNIFTQADIDSFEKWSTELDDQLKEGNNQIAFDVYNLSMKKRFERFSYALKLLDQEITFDTDDEIELDRTDAAWPKDQT ELNELWRQRVKYDALNLKLTGKDWPEIKEILEKRYNNAMKRITQTRNEDVFQLYMNAFAREVDPHTSYLSPRNAEQFQSE MNLSLEGIGAVLQMTDDYTVIRSLVAGGPASKSKQLGEGDRIIGVGQDKKDIVDVIGWRLDDVVQLIKGPKGTKVHLQVL PEGKDSKSYVVTIVRDKIRLEDRAVKAEVIEKDGKKIGVLEVPSFYVGLSADTDKLLTDLKGKGIDGIIVDLRNNGGGAL TEATALTGLFIEKGPVVQVRDSYGRVKVNADTDGQISYSGPMTVLVNRYSASASEIFAAALQDYGRAIILGENSFGKGTV QQHRSLNHIYDLFDKEIGYVQYTIQKFYRIDGGSTQNKGVVPDIPFPTAIDPEETGESVEDNALPWDSIEKADYQVLQRN DSLIEQLRVKHDERIANELEFKFIAEDIAKYKAEKDDNTLSLNEKVRKQESEQADKQRLDRINQRQALAGKEAFKTLDDV PKDYETPDAYLDESVAIMVDMLKKPS
Sequences:
>Translated_666_residues MKCRSKVTLIAASLWLAASAQALEAKLSEKDLPLLAPEVQHETASKRVTSRFTRSHYKHFNFNDDFSRAMFNRYIEMLDY NKNIFTQADIDSFEKWSTELDDQLKEGNNQIAFDVYNLSMKKRFERFSYALKLLDQEITFDTDDEIELDRTDAAWPKDQT ELNELWRQRVKYDALNLKLTGKDWPEIKEILEKRYNNAMKRITQTRNEDVFQLYMNAFAREVDPHTSYLSPRNAEQFQSE MNLSLEGIGAVLQMTDDYTVIRSLVAGGPASKSKQLGEGDRIIGVGQDKKDIVDVIGWRLDDVVQLIKGPKGTKVHLQVL PEGKDSKSYVVTIVRDKIRLEDRAVKAEVIEKDGKKIGVLEVPSFYVGLSADTDKLLTDLKGKGIDGIIVDLRNNGGGAL TEATALTGLFIEKGPVVQVRDSYGRVKVNADTDGQISYSGPMTVLVNRYSASASEIFAAALQDYGRAIILGENSFGKGTV QQHRSLNHIYDLFDKEIGYVQYTIQKFYRIDGGSTQNKGVVPDIPFPTAIDPEETGESVEDNALPWDSIEKADYQVLQRN DSLIEQLRVKHDERIANELEFKFIAEDIAKYKAEKDDNTLSLNEKVRKQESEQADKQRLDRINQRQALAGKEAFKTLDDV PKDYETPDAYLDESVAIMVDMLKKPS >Mature_666_residues MKCRSKVTLIAASLWLAASAQALEAKLSEKDLPLLAPEVQHETASKRVTSRFTRSHYKHFNFNDDFSRAMFNRYIEMLDY NKNIFTQADIDSFEKWSTELDDQLKEGNNQIAFDVYNLSMKKRFERFSYALKLLDQEITFDTDDEIELDRTDAAWPKDQT ELNELWRQRVKYDALNLKLTGKDWPEIKEILEKRYNNAMKRITQTRNEDVFQLYMNAFAREVDPHTSYLSPRNAEQFQSE MNLSLEGIGAVLQMTDDYTVIRSLVAGGPASKSKQLGEGDRIIGVGQDKKDIVDVIGWRLDDVVQLIKGPKGTKVHLQVL PEGKDSKSYVVTIVRDKIRLEDRAVKAEVIEKDGKKIGVLEVPSFYVGLSADTDKLLTDLKGKGIDGIIVDLRNNGGGAL TEATALTGLFIEKGPVVQVRDSYGRVKVNADTDGQISYSGPMTVLVNRYSASASEIFAAALQDYGRAIILGENSFGKGTV QQHRSLNHIYDLFDKEIGYVQYTIQKFYRIDGGSTQNKGVVPDIPFPTAIDPEETGESVEDNALPWDSIEKADYQVLQRN DSLIEQLRVKHDERIANELEFKFIAEDIAKYKAEKDDNTLSLNEKVRKQESEQADKQRLDRINQRQALAGKEAFKTLDDV PKDYETPDAYLDESVAIMVDMLKKPS
Specific function: Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=668, Percent_Identity=54.7904191616767, Blast_Score=746, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 - InterPro: IPR020992 [H]
Pfam domain/function: PF11818 DUF3340; PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 75573; Mature: 75573
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKCRSKVTLIAASLWLAASAQALEAKLSEKDLPLLAPEVQHETASKRVTSRFTRSHYKHF CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC NFNDDFSRAMFNRYIEMLDYNKNIFTQADIDSFEKWSTELDDQLKEGNNQIAFDVYNLSM CCCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHH KKRFERFSYALKLLDQEITFDTDDEIELDRTDAAWPKDQTELNELWRQRVKYDALNLKLT HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEC GKDWPEIKEILEKRYNNAMKRITQTRNEDVFQLYMNAFAREVDPHTSYLSPRNAEQFQSE CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH MNLSLEGIGAVLQMTDDYTVIRSLVAGGPASKSKQLGEGDRIIGVGQDKKDIVDVIGWRL HCCCHHHCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCH DDVVQLIKGPKGTKVHLQVLPEGKDSKSYVVTIVRDKIRLEDRAVKAEVIEKDGKKIGVL HHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEE EVPSFYVGLSADTDKLLTDLKGKGIDGIIVDLRNNGGGALTEATALTGLFIEKGPVVQVR ECCCEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHEEECCCCEEEEE DSYGRVKVNADTDGQISYSGPMTVLVNRYSASASEIFAAALQDYGRAIILGENSFGKGTV CCCCEEEEECCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHH QQHRSLNHIYDLFDKEIGYVQYTIQKFYRIDGGSTQNKGVVPDIPFPTAIDPEETGESVE HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC DNALPWDSIEKADYQVLQRNDSLIEQLRVKHDERIANELEFKFIAEDIAKYKAEKDDNTL CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE SLNEKVRKQESEQADKQRLDRINQRQALAGKEAFKTLDDVPKDYETPDAYLDESVAIMVD EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHH MLKKPS HHCCCC >Mature Secondary Structure MKCRSKVTLIAASLWLAASAQALEAKLSEKDLPLLAPEVQHETASKRVTSRFTRSHYKHF CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC NFNDDFSRAMFNRYIEMLDYNKNIFTQADIDSFEKWSTELDDQLKEGNNQIAFDVYNLSM CCCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHH KKRFERFSYALKLLDQEITFDTDDEIELDRTDAAWPKDQTELNELWRQRVKYDALNLKLT HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEC GKDWPEIKEILEKRYNNAMKRITQTRNEDVFQLYMNAFAREVDPHTSYLSPRNAEQFQSE CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH MNLSLEGIGAVLQMTDDYTVIRSLVAGGPASKSKQLGEGDRIIGVGQDKKDIVDVIGWRL HCCCHHHCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCH DDVVQLIKGPKGTKVHLQVLPEGKDSKSYVVTIVRDKIRLEDRAVKAEVIEKDGKKIGVL HHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEE EVPSFYVGLSADTDKLLTDLKGKGIDGIIVDLRNNGGGALTEATALTGLFIEKGPVVQVR ECCCEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHEEECCCCEEEEE DSYGRVKVNADTDGQISYSGPMTVLVNRYSASASEIFAAALQDYGRAIILGENSFGKGTV CCCCEEEEECCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHH QQHRSLNHIYDLFDKEIGYVQYTIQKFYRIDGGSTQNKGVVPDIPFPTAIDPEETGESVE HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC DNALPWDSIEKADYQVLQRNDSLIEQLRVKHDERIANELEFKFIAEDIAKYKAEKDDNTL CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE SLNEKVRKQESEQADKQRLDRINQRQALAGKEAFKTLDDVPKDYETPDAYLDESVAIMVD EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHH MLKKPS HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1856173; 1729701; 9097040; 9278503; 1447154; 10049386; 7499412; 8576225 [H]