| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is napG
Identifier: 37679743
GI number: 37679743
Start: 1605591
End: 1606496
Strand: Direct
Name: napG
Synonym: VV1559
Alternate gene names: 37679743
Gene position: 1605591-1606496 (Clockwise)
Preceding gene: 37679742
Following gene: 37679744
Centisome position: 47.86
GC content: 50.77
Gene sequence:
>906_bases GTGTTTGATTACCCTTTTGGGGTGATAGAAAACGAACGCCATCCAGTTACATTACGCTTATATCTTCAGCGATTTTGTGC GCGGACAACTAGTATAAAACAAGTGCGACACATGAAGGCGATAGGTGAAGCAATGAGTGTAAGCAACAGCAAAAAAACAT CCGAAAGTCGAAGACGATTTCTTCGCGATTCCGTTAGAACATTTGCCGGCGTTGGCGCAGCGGCCACCGTTCTCGGCCTG CAATCTAAGCAAAGCCAGGCTCGTGGTGGTACTGGCGTTCCACTTCGCCCGCCAGGTGCCTTACCCAAAGGGGAGTTTGA AAAAGCCTGCACCCGTTGTGGTTTGTGTGTTCAGGCATGTCCGTATGATACCTTGAAGCTGGCGACGTTACTCTCCCCAG TGGAGTCGGGCACACCTTATTTTCATGCTCGGGAGATCCCATGTGAAATGTGTGAAGACATTCCTTGCGTGGCCGCCTGC CCAAGTGGAGCGCTTGATCCGAATCTCACGGATATTGATGACGCTCGTATGGGGTTAGCAGTCTTAATTGACCATGAAAG CTGCTTGAACTGGCAGGGATTGCGCTGTGATGTCTGCTACCGAGTTTGCCCTGTTATCGACGAGGCCATTACGCTGGAGC ACGTTCGAAATGAAAGAACCGGTTATCACGCGAAGTTGATCCCGACCGTGCATTCGGATAAATGCACTGGCTGCGGTAAA TGTGAGCAGGCGTGCATTACCGAAGTCGCTGCGATCAAAGTCATTCCGCATGATCTCGCCCAAGGAAAAATAGGCGACCA TTACCAGCTTGGATGGGAGGAGATTACCAAGCCTTTGCAAAACACCGCCCCAGATACCAGTGATATGCCAACTGGCGCGT TGGAAACCTTGGGAGGATCAAAATAA
Upstream 100 bases:
>100_bases CCTTCACCCGCTTTAATGCTCGCGGCTTCCATCTTTAGCGGACAAAAATCGTGAGCTTAGTGTCAGAGTTGAATAATGAC GTTTGATCTAACTCAATCAA
Downstream 100 bases:
>100_bases TGGCGAAGAATTTAGCAAAAGATGCAGGTCGTGAAGCAAGACAGAAGTTAGGTTGGTGGCATGCTCACCGTTTCCTTATC TTAAGACGTTTGGCTCAGTT
Product: quinol dehydrogenase periplasmic component
Products: reduced acceptor; NO3- [C]
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MFDYPFGVIENERHPVTLRLYLQRFCARTTSIKQVRHMKAIGEAMSVSNSKKTSESRRRFLRDSVRTFAGVGAAATVLGL QSKQSQARGGTGVPLRPPGALPKGEFEKACTRCGLCVQACPYDTLKLATLLSPVESGTPYFHAREIPCEMCEDIPCVAAC PSGALDPNLTDIDDARMGLAVLIDHESCLNWQGLRCDVCYRVCPVIDEAITLEHVRNERTGYHAKLIPTVHSDKCTGCGK CEQACITEVAAIKVIPHDLAQGKIGDHYQLGWEEITKPLQNTAPDTSDMPTGALETLGGSK
Sequences:
>Translated_301_residues MFDYPFGVIENERHPVTLRLYLQRFCARTTSIKQVRHMKAIGEAMSVSNSKKTSESRRRFLRDSVRTFAGVGAAATVLGL QSKQSQARGGTGVPLRPPGALPKGEFEKACTRCGLCVQACPYDTLKLATLLSPVESGTPYFHAREIPCEMCEDIPCVAAC PSGALDPNLTDIDDARMGLAVLIDHESCLNWQGLRCDVCYRVCPVIDEAITLEHVRNERTGYHAKLIPTVHSDKCTGCGK CEQACITEVAAIKVIPHDLAQGKIGDHYQLGWEEITKPLQNTAPDTSDMPTGALETLGGSK >Mature_301_residues MFDYPFGVIENERHPVTLRLYLQRFCARTTSIKQVRHMKAIGEAMSVSNSKKTSESRRRFLRDSVRTFAGVGAAATVLGL QSKQSQARGGTGVPLRPPGALPKGEFEKACTRCGLCVQACPYDTLKLATLLSPVESGTPYFHAREIPCEMCEDIPCVAAC PSGALDPNLTDIDDARMGLAVLIDHESCLNWQGLRCDVCYRVCPVIDEAITLEHVRNERTGYHAKLIPTVHSDKCTGCGK CEQACITEVAAIKVIPHDLAQGKIGDHYQLGWEEITKPLQNTAPDTSDMPTGALETLGGSK
Specific function: Involved in electron transfer [H]
COG id: COG1145
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Escherichia coli, GI1788533, Length=228, Percent_Identity=64.9122807017544, Blast_Score=310, Evalue=9e-86,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR004494 - InterPro: IPR006311 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32820; Mature: 32820
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 5.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 7.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDYPFGVIENERHPVTLRLYLQRFCARTTSIKQVRHMKAIGEAMSVSNSKKTSESRRRF CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LRDSVRTFAGVGAAATVLGLQSKQSQARGGTGVPLRPPGALPKGEFEKACTRCGLCVQAC HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCC PYDTLKLATLLSPVESGTPYFHAREIPCEMCEDIPCVAACPSGALDPNLTDIDDARMGLA CCHHHHHHHHHHHHHCCCCCEECCCCCHHHHCCCCCEEECCCCCCCCCCCCCCHHHCCEE VLIDHESCLNWQGLRCDVCYRVCPVIDEAITLEHVRNERTGYHAKLIPTVHSDKCTGCGK EEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCH CEQACITEVAAIKVIPHDLAQGKIGDHYQLGWEEITKPLQNTAPDTSDMPTGALETLGGS HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCC K C >Mature Secondary Structure MFDYPFGVIENERHPVTLRLYLQRFCARTTSIKQVRHMKAIGEAMSVSNSKKTSESRRRF CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LRDSVRTFAGVGAAATVLGLQSKQSQARGGTGVPLRPPGALPKGEFEKACTRCGLCVQAC HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCC PYDTLKLATLLSPVESGTPYFHAREIPCEMCEDIPCVAACPSGALDPNLTDIDDARMGLA CCHHHHHHHHHHHHHCCCCCEECCCCCHHHHCCCCCEEECCCCCCCCCCCCCCHHHCCEE VLIDHESCLNWQGLRCDVCYRVCPVIDEAITLEHVRNERTGYHAKLIPTVHSDKCTGCGK EEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCH CEQACITEVAAIKVIPHDLAQGKIGDHYQLGWEEITKPLQNTAPDTSDMPTGALETLGGS HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCC K C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Acceptor; nitrite [C]
Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]