| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is pldA [H]
Identifier: 37679650
GI number: 37679650
Start: 1503963
End: 1504730
Strand: Direct
Name: pldA [H]
Synonym: VV1466
Alternate gene names: 37679650
Gene position: 1503963-1504730 (Clockwise)
Preceding gene: 37679649
Following gene: 37679651
Centisome position: 44.83
GC content: 45.96
Gene sequence:
>768_bases ATGAAGTTTAAAGCGCTCGCATTGCTCTTAACCGCCCCTTTGTTTGCTCAGGCGAAAAGCCTCAATACCATTTCCAGTTA TGAAGATAACTATGCGCTTGGCACTTATACCTCCGATATCAATGATGAAGCCTATGAAGCCAGTGGTTCCGGCATGGATA ATTTGCAGCACTTCGAAGTGAAGTTTCAGCTCTCGGTTTCGGTTCCCCTCTATCGATTTAATAAAGCCACTGCCGTCGTG GGTTCCTATACGCAAAAATCCCTTTGGCAATTGGCCAATTCTGATATCTCTTCTCCCTTTAGAGAAACCAACTATAAGCC CCAGCTGTTTATTGCTCATCAAAGCAATATGCTGATCTTTAACCATTTGGAGGCGGGCTATAAGCACGAGTCTAATGGTC GTTCATCGGCGTTATCTCGTAGTTGGGATCGTCTCTACCTTGCTGCAGAGCGTTTGGATGGGCCGTTGGAGTACGGTGTG CACCTTTGGTCTGTGGTGGGGGATACATCAGAAAACCGAGATATTGAAGATTACTACGCACCGTATGAAATTTGGATGAA GCTTTACAGCGCGGCAGGCATATTTAATGCTCGAGGATTCTACAATTGGGATGACAGCCGTGGTGGCGTAGAAGTGGGCT ATACCTTTTACTTTAATGATCTGATTGGCATCTACATTCAGGCGTACCATGGTTATGGTGAAACTCTGATCGATTATGAC CACAATCAAACTCGGATCGGTGCCGGTTTCAAGCTGGTACGCTGGTAA
Upstream 100 bases:
>100_bases TGCCGCTTTATGGCAACTTGCTCAAGCCCTTGTTTAGTGTTTGAAAGAGAAATAACCGTTCTCGAATAAATGGCTAAGCA TCTATCACTGAAGGAACACA
Downstream 100 bases:
>100_bases GTAAAAACGATGCTCTCCCTCTCTTAAATGGGAGGGTATTTGTTTTAAACGCAAAATATTAATCAATCCGACGCATATCG TTAAAGGGTCTGAGTGACGA
Product: outer membrane phospholipase A
Products: NA
Alternate protein names: Detergent-resistant phospholipase A; DR-phospholipase A; Outer membrane phospholipase A; OM PLA; Phosphatidylcholine 1-acylhydrolase [H]
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MKFKALALLLTAPLFAQAKSLNTISSYEDNYALGTYTSDINDEAYEASGSGMDNLQHFEVKFQLSVSVPLYRFNKATAVV GSYTQKSLWQLANSDISSPFRETNYKPQLFIAHQSNMLIFNHLEAGYKHESNGRSSALSRSWDRLYLAAERLDGPLEYGV HLWSVVGDTSENRDIEDYYAPYEIWMKLYSAAGIFNARGFYNWDDSRGGVEVGYTFYFNDLIGIYIQAYHGYGETLIDYD HNQTRIGAGFKLVRW
Sequences:
>Translated_255_residues MKFKALALLLTAPLFAQAKSLNTISSYEDNYALGTYTSDINDEAYEASGSGMDNLQHFEVKFQLSVSVPLYRFNKATAVV GSYTQKSLWQLANSDISSPFRETNYKPQLFIAHQSNMLIFNHLEAGYKHESNGRSSALSRSWDRLYLAAERLDGPLEYGV HLWSVVGDTSENRDIEDYYAPYEIWMKLYSAAGIFNARGFYNWDDSRGGVEVGYTFYFNDLIGIYIQAYHGYGETLIDYD HNQTRIGAGFKLVRW >Mature_255_residues MKFKALALLLTAPLFAQAKSLNTISSYEDNYALGTYTSDINDEAYEASGSGMDNLQHFEVKFQLSVSVPLYRFNKATAVV GSYTQKSLWQLANSDISSPFRETNYKPQLFIAHQSNMLIFNHLEAGYKHESNGRSSALSRSWDRLYLAAERLDGPLEYGV HLWSVVGDTSENRDIEDYYAPYEIWMKLYSAAGIFNARGFYNWDDSRGGVEVGYTFYFNDLIGIYIQAYHGYGETLIDYD HNQTRIGAGFKLVRW
Specific function: Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities [H]
COG id: COG2829
COG function: function code M; Outer membrane phospholipase A
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein. Note=One of the very few enzymes located there (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phospholipase A1 family [H]
Homologues:
Organism=Escherichia coli, GI2367300, Length=236, Percent_Identity=43.6440677966102, Blast_Score=185, Evalue=2e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003187 [H]
Pfam domain/function: PF02253 PLA1 [H]
EC number: =3.1.1.32; =3.1.1.4 [H]
Molecular weight: Translated: 29095; Mature: 29095
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFKALALLLTAPLFAQAKSLNTISSYEDNYALGTYTSDINDEAYEASGSGMDNLQHFEV CCHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEE KFQLSVSVPLYRFNKATAVVGSYTQKSLWQLANSDISSPFRETNYKPQLFIAHQSNMLIF EEEEEEECCEEECCCCEEEECCHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEECCCEEEE NHLEAGYKHESNGRSSALSRSWDRLYLAAERLDGPLEYGVHLWSVVGDTSENRDIEDYYA ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCCCCHHHHHC PYEIWMKLYSAAGIFNARGFYNWDDSRGGVEVGYTFYFNDLIGIYIQAYHGYGETLIDYD HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEHHHHEEEEEEECCCCCEEEECC HNQTRIGAGFKLVRW CCCEEECCCEEEECC >Mature Secondary Structure MKFKALALLLTAPLFAQAKSLNTISSYEDNYALGTYTSDINDEAYEASGSGMDNLQHFEV CCHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEE KFQLSVSVPLYRFNKATAVVGSYTQKSLWQLANSDISSPFRETNYKPQLFIAHQSNMLIF EEEEEEECCEEECCCCEEEECCHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEECCCEEEE NHLEAGYKHESNGRSSALSRSWDRLYLAAERLDGPLEYGVHLWSVVGDTSENRDIEDYYA ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCCCCHHHHHC PYEIWMKLYSAAGIFNARGFYNWDDSRGGVEVGYTFYFNDLIGIYIQAYHGYGETLIDYD HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEHHHHEEEEEEECCCCCEEEECC HNQTRIGAGFKLVRW CCCEEECCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8300539 [H]