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The map label for this gene is dcrA [H]

Identifier: 37679586

GI number: 37679586

Start: 1428393

End: 1430009

Strand: Direct

Name: dcrA [H]

Synonym: VV1402

Alternate gene names: 37679586

Gene position: 1428393-1430009 (Clockwise)

Preceding gene: 37679585

Following gene: 37679587

Centisome position: 42.58

GC content: 49.97

Gene sequence:

>1617_bases
GTGAAGATGTCAGTCAGGAAAAAGCTCTACGCTGGTTTTGGCAGTATTTTAGCCATTATGCTGGTGATGGTGACGACGAT
TTGGATAGAAGTGACGGAGTCGCATTCTGTGGCCAATGAAGTGCGTCAAGACGATGTACCAGAAGTGGTTTACTACTTAA
TTTTGGTGGATGAAGCGGGAGACGTCTACCGTGATGCGATGGGGGTTGTGACAGGCGTAGAAGGCGCAGTGCAAGATTAC
CGTGACAACAAAGGGGAGTTTGCGGACGCACTAAGAGAAGTGCGTAAACTCGAAACTCCAGGGGGAGAAGATGATCGCCG
CCTTGAGAAAATTGAATCGTCCATGAAGCAGTTTACTGACGCGTTTGAAGCTCAAATCTTGGCGAAAAATGGACAGGGAG
ACATTGATGAATCTCTGATTGTGGCTTTACGCACGTTGTATCAAACCCACTTGATTCCAATTGAAAACATGCTTGATGAG
GCATCAGAGGAAGAAATTGCTGGTGCAGATGCGGCCATGGGGGCCTTAGAGGACTCTCTGTCTAATATTGAGCGTACCAT
CATGATACTCACCGCGATTGGTATCGTCCTAACATGTACCATTGCTTATCTGCTTTCGAATTCGATTACCGTGCGCTTGA
GTAAGCTAGATGAAGTGGCTCAACGTGTTGCTGGTGGCGATCTCACCGCAGAAGATATTGAAGATCGTTCAGGCGATGAG
TTGGCTAACCTTGCCGCATCCGTCAATAAAATGCAGCATTCGCTTGTGAGTCTCATTGGCTCAATCTCTTCGGTCACCCG
TGAAGTGCAAGTGGTGACTGGCGATCTCAATAATGTGAGCCGAGACATTGTTCAGGGCGCATCCGCGCAAGCTGACAAAG
CGAACTTGATTGCCACCGCGGCCGAAGAGCTTAGCCTCACCATCTCTGAAGTGGCGCAACAAGGCACCTCAACGTTTGAG
GAAGCCAAACGTTCAGAGTCTTCAGCCGAAGAAGGGCGAAAAGTGATCGTCGATATGGTGGCGAGCATTCAGCAAGTCTC
TCAGCAAATGAGTGATATGTCGGTGCAAATGAACGCACTAGGAACACATAGCGAACAAATTGGTAGCGTGATTAAGGTGA
TTGAAGATATTGCAGCGCAAACCAACCTTTTGGCGTTGAATGCGGCGATTGAAGCGGCCCGCGCTGGTGAGTTTGGCCGT
GGTTTTGCGGTGGTAGCAGATGAGGTTAGAGCGTTAGCTGAAAGAACCACCAAAGCGACCAAGGAAGTGGCAGATATTAT
TCAAGCCATTCAATCAGGGACGCATGATGCGGTGACTTACACTCAAGACAACTGCCGTTTGGTTGAAATTGGTGTTGAGC
AAAGCCAAGGTGCAGTCGCGTCACTGGAGGCGATCGTGGCTGGAGCGGCGAACGTGCAAAGCATGGTGAATTCAATCGCG
ACCGCCGCAGAGGAACAGACCGCCGTGACCAAAGAAATCGCCTCTGACATCACGGCCATCAGTGACATCTCAGAGCAATC
TCTTGCACTTGCCAATCGCAGCTCAGCCAGCGTGGCGGGGCTGGGAAGCAAAGTAGCACAGCTTGAACAGTTGATTGGTA
AGTTCCGTATCGCGTAA

Upstream 100 bases:

>100_bases
CAAAAGGAGGTTTTTTTTTGCGACGCGTCACACTAAACATATTGATTAGCTTGTCGATATAAATGGTGATTGTTCTATTT
ATATTAAGAAGGGAAGTGTT

Downstream 100 bases:

>100_bases
CACCGACGCACTCTGGCTCTTTGGCTGGTATTCATGGTGATAAAGGGTATACTTCGCTCTTATTCTTGAAACCAGCCATT
GACGCTTCATTGGGCTTAAA

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MKMSVRKKLYAGFGSILAIMLVMVTTIWIEVTESHSVANEVRQDDVPEVVYYLILVDEAGDVYRDAMGVVTGVEGAVQDY
RDNKGEFADALREVRKLETPGGEDDRRLEKIESSMKQFTDAFEAQILAKNGQGDIDESLIVALRTLYQTHLIPIENMLDE
ASEEEIAGADAAMGALEDSLSNIERTIMILTAIGIVLTCTIAYLLSNSITVRLSKLDEVAQRVAGGDLTAEDIEDRSGDE
LANLAASVNKMQHSLVSLIGSISSVTREVQVVTGDLNNVSRDIVQGASAQADKANLIATAAEELSLTISEVAQQGTSTFE
EAKRSESSAEEGRKVIVDMVASIQQVSQQMSDMSVQMNALGTHSEQIGSVIKVIEDIAAQTNLLALNAAIEAARAGEFGR
GFAVVADEVRALAERTTKATKEVADIIQAIQSGTHDAVTYTQDNCRLVEIGVEQSQGAVASLEAIVAGAANVQSMVNSIA
TAAEEQTAVTKEIASDITAISDISEQSLALANRSSASVAGLGSKVAQLEQLIGKFRIA

Sequences:

>Translated_538_residues
MKMSVRKKLYAGFGSILAIMLVMVTTIWIEVTESHSVANEVRQDDVPEVVYYLILVDEAGDVYRDAMGVVTGVEGAVQDY
RDNKGEFADALREVRKLETPGGEDDRRLEKIESSMKQFTDAFEAQILAKNGQGDIDESLIVALRTLYQTHLIPIENMLDE
ASEEEIAGADAAMGALEDSLSNIERTIMILTAIGIVLTCTIAYLLSNSITVRLSKLDEVAQRVAGGDLTAEDIEDRSGDE
LANLAASVNKMQHSLVSLIGSISSVTREVQVVTGDLNNVSRDIVQGASAQADKANLIATAAEELSLTISEVAQQGTSTFE
EAKRSESSAEEGRKVIVDMVASIQQVSQQMSDMSVQMNALGTHSEQIGSVIKVIEDIAAQTNLLALNAAIEAARAGEFGR
GFAVVADEVRALAERTTKATKEVADIIQAIQSGTHDAVTYTQDNCRLVEIGVEQSQGAVASLEAIVAGAANVQSMVNSIA
TAAEEQTAVTKEIASDITAISDISEQSLALANRSSASVAGLGSKVAQLEQLIGKFRIA
>Mature_538_residues
MKMSVRKKLYAGFGSILAIMLVMVTTIWIEVTESHSVANEVRQDDVPEVVYYLILVDEAGDVYRDAMGVVTGVEGAVQDY
RDNKGEFADALREVRKLETPGGEDDRRLEKIESSMKQFTDAFEAQILAKNGQGDIDESLIVALRTLYQTHLIPIENMLDE
ASEEEIAGADAAMGALEDSLSNIERTIMILTAIGIVLTCTIAYLLSNSITVRLSKLDEVAQRVAGGDLTAEDIEDRSGDE
LANLAASVNKMQHSLVSLIGSISSVTREVQVVTGDLNNVSRDIVQGASAQADKANLIATAAEELSLTISEVAQQGTSTFE
EAKRSESSAEEGRKVIVDMVASIQQVSQQMSDMSVQMNALGTHSEQIGSVIKVIEDIAAQTNLLALNAAIEAARAGEFGR
GFAVVADEVRALAERTTKATKEVADIIQAIQSGTHDAVTYTQDNCRLVEIGVEQSQGAVASLEAIVAGAANVQSMVNSIA
TAAEEQTAVTKEIASDITAISDISEQSLALANRSSASVAGLGSKVAQLEQLIGKFRIA

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=348, Percent_Identity=29.8850574712644, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI2367378, Length=371, Percent_Identity=29.6495956873315, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788194, Length=317, Percent_Identity=30.5993690851735, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1788195, Length=337, Percent_Identity=29.9703264094956, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1789453, Length=173, Percent_Identity=33.5260115606936, Blast_Score=86, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 57331; Mature: 57331

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMSVRKKLYAGFGSILAIMLVMVTTIWIEVTESHSVANEVRQDDVPEVVYYLILVDEAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHEECCCC
DVYRDAMGVVTGVEGAVQDYRDNKGEFADALREVRKLETPGGEDDRRLEKIESSMKQFTD
HHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AFEAQILAKNGQGDIDESLIVALRTLYQTHLIPIENMLDEASEEEIAGADAAMGALEDSL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHCCHHHHHHHHHHHH
SNIERTIMILTAIGIVLTCTIAYLLSNSITVRLSKLDEVAQRVAGGDLTAEDIEDRSGDE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCHHHHCCCCCHH
LANLAASVNKMQHSLVSLIGSISSVTREVQVVTGDLNNVSRDIVQGASAQADKANLIATA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCCCCHHHHHHHH
AEELSLTISEVAQQGTSTFEEAKRSESSAEEGRKVIVDMVASIQQVSQQMSDMSVQMNAL
HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTHSEQIGSVIKVIEDIAAQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKAT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
KEVADIIQAIQSGTHDAVTYTQDNCRLVEIGVEQSQGAVASLEAIVAGAANVQSMVNSIA
HHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TAAEEQTAVTKEIASDITAISDISEQSLALANRSSASVAGLGSKVAQLEQLIGKFRIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKMSVRKKLYAGFGSILAIMLVMVTTIWIEVTESHSVANEVRQDDVPEVVYYLILVDEAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHEECCCC
DVYRDAMGVVTGVEGAVQDYRDNKGEFADALREVRKLETPGGEDDRRLEKIESSMKQFTD
HHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AFEAQILAKNGQGDIDESLIVALRTLYQTHLIPIENMLDEASEEEIAGADAAMGALEDSL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHCCHHHHHHHHHHHH
SNIERTIMILTAIGIVLTCTIAYLLSNSITVRLSKLDEVAQRVAGGDLTAEDIEDRSGDE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCHHHHCCCCCHH
LANLAASVNKMQHSLVSLIGSISSVTREVQVVTGDLNNVSRDIVQGASAQADKANLIATA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCCCCHHHHHHHH
AEELSLTISEVAQQGTSTFEEAKRSESSAEEGRKVIVDMVASIQQVSQQMSDMSVQMNAL
HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTHSEQIGSVIKVIEDIAAQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKAT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
KEVADIIQAIQSGTHDAVTYTQDNCRLVEIGVEQSQGAVASLEAIVAGAANVQSMVNSIA
HHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TAAEEQTAVTKEIASDITAISDISEQSLALANRSSASVAGLGSKVAQLEQLIGKFRIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]