| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37679561
Identifier: 37679561
GI number: 37679561
Start: 1401811
End: 1402800
Strand: Direct
Name: 37679561
Synonym: VV1377
Alternate gene names: NA
Gene position: 1401811-1402800 (Clockwise)
Preceding gene: 37679560
Following gene: 37679563
Centisome position: 41.79
GC content: 45.66
Gene sequence:
>990_bases ATGAAAAAAACAGTATTAGCGGTGGCGCTATCTCTTGTTGCTGGTTCTGCAATCGCAGCAGACGTAAACCAAAACGTTTC TGAGCGTGCTCGTGAGTCAATGATCGACCTAATCCTTTCTGGCGAAGAATTCTCTGTTGGTGGTCAAGTGGCTGTCGGTG GTGAGTACCTAGAAGGTCGTAAAGTAAACGGCGAGAAAAAAGAATTTCACAACTACGATGTAACTGGTTTTGATCTATTC ATCAACTACCAAAAAGGCAACGTAATCGGTCAGTTTGCAGGTGAATTCGACCTAGCTGAAAACTACTCTTCAATGGATGC TAAGTTCTCTGTAATCGACACTTGGGTTGGTTACAAAACCGGTTTTGGCGTAGCGTCTATCGGTTACGCAAATGACTCTG CTCTTGATGCAGTGGACGGCGCAGCGGATCTAACTATCGAGTACGGTGCATCCGCTTCTGACGCTTCAGACGTAAACCAA GTGATCAAATTTGAAGGCATGAAAGAAGGCTTCAAATACGGCATCGCTTACTACGGTGACCGCGAAGCAGACGCATCTGG TCAACGTGGTTTCAACGGCTATGTTGGTTTTAAAAATGAACAGTTCCAAGTTAACGCTGGTTACGAGAAGAACGACGAGA AAGCTGGTGGCACTGACATCGAGCAAATCTACCTAGTGAACGGTGTGGTGACTTTCGGTGATCTAGCGATCGGCGCGAAT GTTGCGAACCACGAGCGTTTCAACGGCGATGAGTCTATGCTTTACAGCGCATCTGCAGGCTACACAATCGACAAGCTATA CCTAGCTATCGGTTACGCAAATCAAGAAGCATACGAATCAAATGGTGTAGATTCAGAGTGGACTAACTTCGGTGGTTCTT ACCAGTTCACTAACAAGCTGTCTGCACTTGTCGATATCAAAGTTGATCTGTCTGATGACAACAACAGCGATGATCTAGCA GCATTCTTCAAAGTTGCTTACGACTTCTAA
Upstream 100 bases:
>100_bases GAAAGTTTTGTCTTTGAGAATAATTTCGCCGCAACGGCTGGTGCTTACGAGCTAAGTCGAGTGGTGAAAAAATCTATAAA ATTGATAGGACAAAATAAAA
Downstream 100 bases:
>100_bases GAACTTCCTTAGCAATTTATGGCCTGCATTGCGGGCCATTTAAAGCAGGACGCTTTTTTGGCGATAATCCACTGCATTTT CTTTGACCCTCAGGATTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Porine
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MKKTVLAVALSLVAGSAIAADVNQNVSERARESMIDLILSGEEFSVGGQVAVGGEYLEGRKVNGEKKEFHNYDVTGFDLF INYQKGNVIGQFAGEFDLAENYSSMDAKFSVIDTWVGYKTGFGVASIGYANDSALDAVDGAADLTIEYGASASDASDVNQ VIKFEGMKEGFKYGIAYYGDREADASGQRGFNGYVGFKNEQFQVNAGYEKNDEKAGGTDIEQIYLVNGVVTFGDLAIGAN VANHERFNGDESMLYSASAGYTIDKLYLAIGYANQEAYESNGVDSEWTNFGGSYQFTNKLSALVDIKVDLSDDNNSDDLA AFFKVAYDF
Sequences:
>Translated_329_residues MKKTVLAVALSLVAGSAIAADVNQNVSERARESMIDLILSGEEFSVGGQVAVGGEYLEGRKVNGEKKEFHNYDVTGFDLF INYQKGNVIGQFAGEFDLAENYSSMDAKFSVIDTWVGYKTGFGVASIGYANDSALDAVDGAADLTIEYGASASDASDVNQ VIKFEGMKEGFKYGIAYYGDREADASGQRGFNGYVGFKNEQFQVNAGYEKNDEKAGGTDIEQIYLVNGVVTFGDLAIGAN VANHERFNGDESMLYSASAGYTIDKLYLAIGYANQEAYESNGVDSEWTNFGGSYQFTNKLSALVDIKVDLSDDNNSDDLA AFFKVAYDF >Mature_329_residues MKKTVLAVALSLVAGSAIAADVNQNVSERARESMIDLILSGEEFSVGGQVAVGGEYLEGRKVNGEKKEFHNYDVTGFDLF INYQKGNVIGQFAGEFDLAENYSSMDAKFSVIDTWVGYKTGFGVASIGYANDSALDAVDGAADLTIEYGASASDASDVNQ VIKFEGMKEGFKYGIAYYGDREADASGQRGFNGYVGFKNEQFQVNAGYEKNDEKAGGTDIEQIYLVNGVVTFGDLAIGAN VANHERFNGDESMLYSASAGYTIDKLYLAIGYANQEAYESNGVDSEWTNFGGSYQFTNKLSALVDIKVDLSDDNNSDDLA AFFKVAYDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35534; Mature: 35534
Theoretical pI: Translated: 4.02; Mature: 4.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTVLAVALSLVAGSAIAADVNQNVSERARESMIDLILSGEEFSVGGQVAVGGEYLEGR CCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHEECCCEECCCCEEEECCCEECCC KVNGEKKEFHNYDVTGFDLFINYQKGNVIGQFAGEFDLAENYSSMDAKFSVIDTWVGYKT CCCCCHHHHCCCCCEEEEEEEEEECCCEEEEECCCCCHHCCCCCCCCEEEEEEHHHCCCC GFGVASIGYANDSALDAVDGAADLTIEYGASASDASDVNQVIKFEGMKEGFKYGIAYYGD CCCEEEECCCCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHCCEEEECC READASGQRGFNGYVGFKNEQFQVNAGYEKNDEKAGGTDIEQIYLVNGVVTFGDLAIGAN CCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECEEEECCEEECCC VANHERFNGDESMLYSASAGYTIDKLYLAIGYANQEAYESNGVDSEWTNFGGSYQFTNKL CCCCCCCCCCHHEEEECCCCCEEEEEEEEEEECCCHHHHCCCCCCHHHCCCCCEEECCCC SALVDIKVDLSDDNNSDDLAAFFKVAYDF EEEEEEEEEECCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MKKTVLAVALSLVAGSAIAADVNQNVSERARESMIDLILSGEEFSVGGQVAVGGEYLEGR CCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHEECCCEECCCCEEEECCCEECCC KVNGEKKEFHNYDVTGFDLFINYQKGNVIGQFAGEFDLAENYSSMDAKFSVIDTWVGYKT CCCCCHHHHCCCCCEEEEEEEEEECCCEEEEECCCCCHHCCCCCCCCEEEEEEHHHCCCC GFGVASIGYANDSALDAVDGAADLTIEYGASASDASDVNQVIKFEGMKEGFKYGIAYYGD CCCEEEECCCCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHCCEEEECC READASGQRGFNGYVGFKNEQFQVNAGYEKNDEKAGGTDIEQIYLVNGVVTFGDLAIGAN CCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECEEEECCEEECCC VANHERFNGDESMLYSASAGYTIDKLYLAIGYANQEAYESNGVDSEWTNFGGSYQFTNKL CCCCCCCCCCHHEEEECCCCCEEEEEEEEEEECCCHHHHCCCCCCHHHCCCCCEEECCCC SALVDIKVDLSDDNNSDDLAAFFKVAYDF EEEEEEEEEECCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA