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The map label for this gene is pyrF [H]

Identifier: 37679488

GI number: 37679488

Start: 1325580

End: 1326278

Strand: Direct

Name: pyrF [H]

Synonym: VV1304

Alternate gene names: 37679488

Gene position: 1325580-1326278 (Clockwise)

Preceding gene: 37679487

Following gene: 37679489

Centisome position: 39.52

GC content: 46.35

Gene sequence:

>699_bases
ATGATCGACCAAAAAGTTATTGTCGCACTGGATTACGATAATCAAGCCGATGCACTGGCCTTCGTAGATAGAATTGATCC
TGCGTCATGTCGCCTAAAAGTAGGCAAGGAAATGTTTACGCTATTTGGTCCTGATTTCGTACGTGAACTTCACAAACGTG
GTTTTTCTGTATTTCTAGATCTGAAGTTTCACGATATCCCAAATACATGCTCAAAAGCCGTTCGAGCAGCAGCTGAGTTG
GGTGTCTGGATGGTGAATGTACATGCAAGTGGTGGTGAACGGATGATGACAGCATCTCGTGAGATTCTTGAGCCTTATGG
TAAAGATCGCCCGTTACTGATTGGTGTGACCGTACTCACCAGCATGGAGCAAAGCGACCTAGCAGGCATTGGTTTGAACG
TTGCACCACAAGATCACGTGATTCGCTTAGCTACGTTGACGAAGAATTCTGGTTTGGATGGTGTTGTGTGTTCTGCGCAA
GAATCCTCTCTGCTGAAGAATGAGCTGGGCAAAGAGTTTAAATTGGTTACGCCAGGTATTCGCCCGCTCGGCTCAGAACA
AGGTGATCAACGTCGTATCATGACACCACTTGAAGCGGTACAAGCAGGTTCTGATTACCTTGTTATCGGACGGCCAATTA
CGCAGGCAGTAGATCCTGCGGCAGTCTTGCAAGCTATAAATACAAGCCTAACCAAATAG

Upstream 100 bases:

>100_bases
ATTGGATGGCGAATAGTTTCAATGCAGCTGACAGAGTTTCTGTCAGCTGCATTTTTTTAACCTTTTATTTAATAAGAACC
AAAAACAGTTAGGAGATGAA

Downstream 100 bases:

>100_bases
CTTGAGCTCATAGATTGATACTTATGCTGTTTTTATTGTGATACTTGTCGCAAAATAAATGGCGCGTTATGAAAATATTT
ATATTGAATTTTTATGCACT

Product: orotidine 5'-phosphate decarboxylase

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase [H]

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MIDQKVIVALDYDNQADALAFVDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVRAAAEL
GVWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLTSMEQSDLAGIGLNVAPQDHVIRLATLTKNSGLDGVVCSAQ
ESSLLKNELGKEFKLVTPGIRPLGSEQGDQRRIMTPLEAVQAGSDYLVIGRPITQAVDPAAVLQAINTSLTK

Sequences:

>Translated_232_residues
MIDQKVIVALDYDNQADALAFVDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVRAAAEL
GVWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLTSMEQSDLAGIGLNVAPQDHVIRLATLTKNSGLDGVVCSAQ
ESSLLKNELGKEFKLVTPGIRPLGSEQGDQRRIMTPLEAVQAGSDYLVIGRPITQAVDPAAVLQAINTSLTK
>Mature_232_residues
MIDQKVIVALDYDNQADALAFVDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVRAAAEL
GVWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLTSMEQSDLAGIGLNVAPQDHVIRLATLTKNSGLDGVVCSAQ
ESSLLKNELGKEFKLVTPGIRPLGSEQGDQRRIMTPLEAVQAGSDYLVIGRPITQAVDPAAVLQAINTSLTK

Specific function: Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) [H]

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787537, Length=227, Percent_Identity=71.8061674008811, Blast_Score=334, Evalue=3e-93,

Paralogues:

None

Copy number: 6,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR014732
- InterPro:   IPR018089
- InterPro:   IPR001754
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00215 OMPdecase [H]

EC number: =4.1.1.23 [H]

Molecular weight: Translated: 25202; Mature: 25202

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS00156 OMPDECASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDQKVIVALDYDNQADALAFVDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLD
CCCCEEEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEE
LKFHDIPNTCSKAVRAAAELGVWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLT
EEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHH
SMEQSDLAGIGLNVAPQDHVIRLATLTKNSGLDGVVCSAQESSLLKNELGKEFKLVTPGI
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEECCHHHHHHHHHCCCEEEEECCCC
RPLGSEQGDQRRIMTPLEAVQAGSDYLVIGRPITQAVDPAAVLQAINTSLTK
CCCCCCCCCCCHHHCHHHHHHCCCCEEEECCCHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDQKVIVALDYDNQADALAFVDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLD
CCCCEEEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEE
LKFHDIPNTCSKAVRAAAELGVWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLT
EEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHH
SMEQSDLAGIGLNVAPQDHVIRLATLTKNSGLDGVVCSAQESSLLKNELGKEFKLVTPGI
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEECCHHHHHHHHHCCCEEEEECCCC
RPLGSEQGDQRRIMTPLEAVQAGSDYLVIGRPITQAVDPAAVLQAINTSLTK
CCCCCCCCCCCHHHCHHHHHHCCCCEEEECCCHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA