| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is mlc [H]
Identifier: 37679474
GI number: 37679474
Start: 1310984
End: 1312291
Strand: Direct
Name: mlc [H]
Synonym: VV1290
Alternate gene names: 37679474
Gene position: 1310984-1312291 (Clockwise)
Preceding gene: 37679472
Following gene: 37679475
Centisome position: 39.08
GC content: 46.18
Gene sequence:
>1308_bases GTGATGCTGGTCACGGGGATTTATCAATTCACTTCACAATTACTTCGCAAAGTAAAAAAATTGCTCCGTTATAGAATGTT GGAGTGCAAGATGTACATGGCTCAACCGGGCCATATTGATCATATCAAACAGGTCAATGCTGGTCGTGTATACAAACTAA TTGACCTTAAGGGTCCAATCTCTCGAATCGATTTGTCAAAAGAAAGCGAGCTGGCACCGGCGAGTATTACGAAAATTACC CGTGAGTTGATAGAAGCACATCTTGTGCACGAAACTACCGTGCAAGAAGCGATTAGCCGAGGAAGACCAGCGGTCGGCCT TCAAGTGAATAATGCTGGATGGCAATTTCTTTCGATGCGACTTGGACGAGGTTATCTCACCATTGCACTCCATGAATTGG GTGGTGAAGTCCTGATCGATACAAAAATCGATATCCACGAAAGGGATCAAGATGACGTTCTTGCTCGACTCCTACACGAA ATCGAAGAATTTTTCCAAACCTATGCCGATCAACTGGATCGTGTAACCAGTATCGCGATTACGTTGCCTGGCTTAGTCAA TTCAGAACAAGGCATTGTGCTGCAAATGCCGCATTACAATGTTGAAAACCTCGCTCTCGGTCCAGAGATTTACAAAGCGA CTGGGCTACCGGTTTTCATCGCCAATGACACACGAGCTTGGGCTTTGGCGGAAAAGCTATTTGGTCACTCTCAAGGTAAC GAAAACTCGGTTCTTATTTCGATCCACCATGGTTTAGGTGCGGGTATCATACTTGATGGACGGGTATTGCAGGGCCGTCA CGGGAACATTGGCGAATTAGGCCATATCCAGATCGATCCACAAGGCAAACTTTGCCACTGTGGCAACAGAGGGTGCCTTG AAACGGTCGCAAGTTCTAAAGCCATTCGTGAAGAGGTAATGGAACGCATTGCTAATGGAGAGTCGTCCATTCTCGAAGAG CTGGAAGATGTCACGATTGAAAGCATTTGTGAGGCTGCAGCGAATGGAGATGCATTAGCTGTGGATGTCATTGAGAAACT CGGCCGTTATCTTGGCTCGGCGATTGCGATTGTCATCAACTTATTTAACCCAGAAAAAGTGCTGATCGGCGGTGTAATCA ACCAAGCGAAGGAAGTTCTCTATCCGGCTATTCGACGCTGCATTGAAGAGCAAAGCTTGCCTGTTTATCACCAAGATCTT GAACTGGTGGAATCGCGTTTCTATAAACAGGCAACCATGCCAGGGGCTGCATTGATTAAGCAGGCTCTTTACGATGGCTT GCTATTAATGAAAGTGGTCGAAGGTTAA
Upstream 100 bases:
>100_bases TTCAGAAATTTTTTCAAGAAAAATAAGTTTGAGGTGATGCGATGTGTCGCCGACTAAATGATGGATATTTGATTCGATAC ACAAACATTCATGTTTATAC
Downstream 100 bases:
>100_bases ATCCCAACTCGCGGCAAACCTGGATCTTCTCCAGGTTTTGTTTTATTCGGCCTTGAAATCAGTGACCTGCCTATCTCAAT TGCCCCTCATCAATTGATCT
Product: transcriptional regulator
Products: NA
Alternate protein names: Making large colonies protein [H]
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MMLVTGIYQFTSQLLRKVKKLLRYRMLECKMYMAQPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKIT RELIEAHLVHETTVQEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHERDQDDVLARLLHE IEEFFQTYADQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVENLALGPEIYKATGLPVFIANDTRAWALAEKLFGHSQGN ENSVLISIHHGLGAGIILDGRVLQGRHGNIGELGHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEE LEDVTIESICEAAANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIEEQSLPVYHQDL ELVESRFYKQATMPGAALIKQALYDGLLLMKVVEG
Sequences:
>Translated_435_residues MMLVTGIYQFTSQLLRKVKKLLRYRMLECKMYMAQPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKIT RELIEAHLVHETTVQEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHERDQDDVLARLLHE IEEFFQTYADQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVENLALGPEIYKATGLPVFIANDTRAWALAEKLFGHSQGN ENSVLISIHHGLGAGIILDGRVLQGRHGNIGELGHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEE LEDVTIESICEAAANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIEEQSLPVYHQDL ELVESRFYKQATMPGAALIKQALYDGLLLMKVVEG >Mature_435_residues MMLVTGIYQFTSQLLRKVKKLLRYRMLECKMYMAQPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKIT RELIEAHLVHETTVQEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHERDQDDVLARLLHE IEEFFQTYADQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVENLALGPEIYKATGLPVFIANDTRAWALAEKLFGHSQGN ENSVLISIHHGLGAGIILDGRVLQGRHGNIGELGHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEE LEDVTIESICEAAANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIEEQSLPVYHQDL ELVESRFYKQATMPGAALIKQALYDGLLLMKVVEG
Specific function: Transcriptional repressor that regulates the expression of proteins that are part of the phosphotransferase system for sugar uptake. Regulates the expression of malT [H]
COG id: COG1940
COG function: function code KG; Transcriptional regulator/sugar kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ROK (nagC/xylR) family [H]
Homologues:
Organism=Homo sapiens, GI190014632, Length=206, Percent_Identity=31.0679611650485, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI298566325, Length=206, Percent_Identity=31.0679611650485, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI298566315, Length=206, Percent_Identity=31.0679611650485, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI4885285, Length=206, Percent_Identity=31.0679611650485, Blast_Score=79, Evalue=6e-15, Organism=Escherichia coli, GI1787878, Length=402, Percent_Identity=46.5174129353234, Blast_Score=393, Evalue=1e-110, Organism=Escherichia coli, GI1786891, Length=401, Percent_Identity=43.8902743142145, Blast_Score=342, Evalue=2e-95, Organism=Escherichia coli, GI87082127, Length=217, Percent_Identity=24.8847926267281, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1790522, Length=205, Percent_Identity=26.3414634146341, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI87082230, Length=227, Percent_Identity=27.7533039647577, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000600 - InterPro: IPR011991 [H]
Pfam domain/function: PF00480 ROK [H]
EC number: NA
Molecular weight: Translated: 48143; Mature: 48143
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: PS01125 ROK
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLVTGIYQFTSQLLRKVKKLLRYRMLECKMYMAQPGHIDHIKQVNAGRVYKLIDLKGPI CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCCH SRIDLSKESELAPASITKITRELIEAHLVHETTVQEAISRGRPAVGLQVNNAGWQFLSMR HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH LGRGYLTIALHELGGEVLIDTKIDIHERDQDDVLARLLHEIEEFFQTYADQLDRVTSIAI HCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE TLPGLVNSEQGIVLQMPHYNVENLALGPEIYKATGLPVFIANDTRAWALAEKLFGHSQGN ECCCCCCCCCCEEEECCCCCCCCEECCCHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCC ENSVLISIHHGLGAGIILDGRVLQGRHGNIGELGHIQIDPQGKLCHCGNRGCLETVASSK CCEEEEEEECCCCCCEEECCEEECCCCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHH AIREEVMERIANGESSILEELEDVTIESICEAAANGDALAVDVIEKLGRYLGSAIAIVIN HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHEE LFNPEKVLIGGVINQAKEVLYPAIRRCIEEQSLPVYHQDLELVESRFYKQATMPGAALIK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH QALYDGLLLMKVVEG HHHHHHHHHHHHHCC >Mature Secondary Structure MMLVTGIYQFTSQLLRKVKKLLRYRMLECKMYMAQPGHIDHIKQVNAGRVYKLIDLKGPI CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCCH SRIDLSKESELAPASITKITRELIEAHLVHETTVQEAISRGRPAVGLQVNNAGWQFLSMR HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH LGRGYLTIALHELGGEVLIDTKIDIHERDQDDVLARLLHEIEEFFQTYADQLDRVTSIAI HCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE TLPGLVNSEQGIVLQMPHYNVENLALGPEIYKATGLPVFIANDTRAWALAEKLFGHSQGN ECCCCCCCCCCEEEECCCCCCCCEECCCHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCC ENSVLISIHHGLGAGIILDGRVLQGRHGNIGELGHIQIDPQGKLCHCGNRGCLETVASSK CCEEEEEEECCCCCCEEECCEEECCCCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHH AIREEVMERIANGESSILEELEDVTIESICEAAANGDALAVDVIEKLGRYLGSAIAIVIN HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHEE LFNPEKVLIGGVINQAKEVLYPAIRRCIEEQSLPVYHQDLELVESRFYKQATMPGAALIK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH QALYDGLLLMKVVEG HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7766024; 9097039; 9278503 [H]