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The map label for this gene is yceD [C]

Identifier: 37679454

GI number: 37679454

Start: 1292123

End: 1292647

Strand: Direct

Name: yceD [C]

Synonym: VV1270

Alternate gene names: 37679454

Gene position: 1292123-1292647 (Clockwise)

Preceding gene: 37679452

Following gene: 37679455

Centisome position: 38.52

GC content: 41.14

Gene sequence:

>525_bases
ATGCAAAAGGTAAAAATACCGCGAACGGTGGATCCAGCCAAAGCCGCGCAAAAGAGATTGGATTACGATGGCATCATCCA
AGCCAGTCTGTTTAAGCGTCTAGCTGAAATGACCGAAGGCGTAAAACGCGACGCAGAAGTCTATTTGTCATTTGAGATAG
ATGAACAGCGACTTGTTGTTATCTCTGGTAAAGCTAACATCGAAGTCGGTTTAGAATGTCAACGTTGTAATGAGACCTTC
ACGCATCTGTGTGAAGTAGAGTTCACTTATACTCCTTACTACAGTGAGAAAAGTGAACAAGATGCCCCAGAATGTTACGA
TTTGGTAGATCTTAACGAATATGGCGAAGTCGACCTTATTCAACTTGTTGAAGATGAGTTCATCTTAGAATTACCTCAAA
TTGCAATGCATGACGAAGCGGATTGCAGCGTTGATTCAAATAACATGGTTTTTGGTGAGATTCCTGAAGAAATTGAGGAA
ACAAAACCAAATCCGTTCGACGTTTTAAAAAGCCTAAAGCGCTAA

Upstream 100 bases:

>100_bases
TTGGAGCATGCTAATGCTCTGTATAACAAGCGCAAAAAAGTACAACTTTTTTGCCTTTTCCTTTGACTAAATTCTTTTTG
GAAGATAATATTCGCGCCCT

Downstream 100 bases:

>100_bases
GCTTTAAGCTGAACCATAACATAGGAGTAGGGTCAATGGCCGTACAACAAAACCGTAAGACACGTTCTAAGCGTGGCATG
CGTCGTTCACACGATGCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MQKVKIPRTVDPAKAAQKRLDYDGIIQASLFKRLAEMTEGVKRDAEVYLSFEIDEQRLVVISGKANIEVGLECQRCNETF
THLCEVEFTYTPYYSEKSEQDAPECYDLVDLNEYGEVDLIQLVEDEFILELPQIAMHDEADCSVDSNNMVFGEIPEEIEE
TKPNPFDVLKSLKR

Sequences:

>Translated_174_residues
MQKVKIPRTVDPAKAAQKRLDYDGIIQASLFKRLAEMTEGVKRDAEVYLSFEIDEQRLVVISGKANIEVGLECQRCNETF
THLCEVEFTYTPYYSEKSEQDAPECYDLVDLNEYGEVDLIQLVEDEFILELPQIAMHDEADCSVDSNNMVFGEIPEEIEE
TKPNPFDVLKSLKR
>Mature_174_residues
MQKVKIPRTVDPAKAAQKRLDYDGIIQASLFKRLAEMTEGVKRDAEVYLSFEIDEQRLVVISGKANIEVGLECQRCNETF
THLCEVEFTYTPYYSEKSEQDAPECYDLVDLNEYGEVDLIQLVEDEFILELPQIAMHDEADCSVDSNNMVFGEIPEEIEE
TKPNPFDVLKSLKR

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yceD [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=174, Percent_Identity=49.4252873563218, Blast_Score=178, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19993; Mature: 19993

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVKIPRTVDPAKAAQKRLDYDGIIQASLFKRLAEMTEGVKRDAEVYLSFEIDEQRLVV
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEE
ISGKANIEVGLECQRCNETFTHLCEVEFTYTPYYSEKSEQDAPECYDLVDLNEYGEVDLI
EECCCCEEECCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCHHHEECCCCCCCCHHH
QLVEDEFILELPQIAMHDEADCSVDSNNMVFGEIPEEIEETKPNPFDVLKSLKR
HHHHHHHHHHCCHHHCCCCCCCCCCCCCEEECCCCHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MQKVKIPRTVDPAKAAQKRLDYDGIIQASLFKRLAEMTEGVKRDAEVYLSFEIDEQRLVV
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEE
ISGKANIEVGLECQRCNETFTHLCEVEFTYTPYYSEKSEQDAPECYDLVDLNEYGEVDLI
EECCCCEEECCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCHHHEECCCCCCCCHHH
QLVEDEFILELPQIAMHDEADCSVDSNNMVFGEIPEEIEETKPNPFDVLKSLKR
HHHHHHHHHHCCHHHCCCCCCCCCCCCCEEECCCCHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]