| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is cinA [C]
Identifier: 37679425
GI number: 37679425
Start: 1257988
End: 1259223
Strand: Direct
Name: cinA [C]
Synonym: VV1241
Alternate gene names: 37679425
Gene position: 1257988-1259223 (Clockwise)
Preceding gene: 37679422
Following gene: 37679429
Centisome position: 37.5
GC content: 47.82
Gene sequence:
>1236_bases GTGAAAATTGCCATGTTGAGTACGGGTGAAGAAGTGCTTCACGGTGACATTGTCGACACGAATGCCGCTTGGCTTTCAAG CGTCATGTATGAGCAAGGTTTTGCCCTGACTAAGCGTTCGACCGTTGGGGATCAAATGAATGCCTTGGTCGAAGAGCTAC TCATGTTGAGCTTTAACAACGATGTTGTCATCGTCAATGGTGGCTTAGGACCAACCACAGACGATATGAGTGCGGCGGCG GCAGCCAAAGCCGCCGAATGCAAAATTGTGCTGTTTAAAGCGTGGTTGACTCGCATGGAAGAGATGTACCGTGAGCGTAA TCGCCCTATGCCAGACAGTAACCTCAAGCAAGCCATGTTGCCTGAAATAGCCGAAATTGTAGACAACCCGATAGGTACGG CTTGCGGCTTCAAGATGCACATCAATGATGCCCTGTTCTATTTCACGCCGGGTGTCCCTCGTGAATTTAAAGTTATGGTT GAAACGCAGATTTTGCCTGATCTCAAAGAACAGTGGCCAAATAATGAAGCGTATCAATGTAGCCGTCTTTATACCTTTGG TCTGTCTGAATCTGGTATTTCAGATAAGCTCGATGCGTTGAAATTGCCACAAGGCTACGAGTTAGGTTACCGCTCAAGTT TGCCATTTATTGAAGTGAAACTGTTTGGACCAAAAGATGCCCTTGATGAGCGCGTCAAAGTGATGCAGTTGATCTACAAA TTACTGGAAAGTAACGTAGTGAGCGTGGACGAGCCGATGCTAGAACACATTGGCCATATGTTGAAAGAGAAAGACTTAAC TTTAGCGACGGCGGAGCAGAGTAGCTATGGTTACTTAACCAGTTGGCTGCAATCTGAGCAGAATATTGCGGAGCAGAGTG GCCATGGCTGGGTGCTTTCGGCCAAAGGCAGTGAGACCATCGATCACAGTAATCCTCTTGCTGCGGCTTTTGCTTTAGCG GGTGCGACACGTGAAAAATGCGCGACAGACCTTGCTTTGGTGACCGGTAAACTCAACGGAAAACAATTCTCTGTGGCTTT ATCAGCGCATGGTGGTGAGTGGGGGATGGTGCTGGAGTTAAACCGTGAGTATGCGCGACAGGAAGCGAATAAGGTGATCA GCACGGTCGCGGCGGATGTATTGCGTCGTTACTTAGAAAAGAAACCCATGTTTGGGGACTATTTCTCCGTCACGAAAGTC AAAGAAATGTTTGTGCCGAGCAGTCTAGTGAAATAA
Upstream 100 bases:
>100_bases GTCATCAATTTAGCCGAAACAATTGGCATAAGAGTTTGGTCTAACCGAAATATATCGCTTTAAGCGTGAATGACTCCAGA TTATTTAAGGAATACGATTC
Downstream 100 bases:
>100_bases ATATGTTGAGTTAAGCACGATTTGTTTTTGTTCACACGTCCACACAGAAAGAAAAAGAGCCAGCATATTTTTTGCTGGCT CTTTGTTTCTTGGTCAAAAA
Product: putative competence damage protein CinA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MKIAMLSTGEEVLHGDIVDTNAAWLSSVMYEQGFALTKRSTVGDQMNALVEELLMLSFNNDVVIVNGGLGPTTDDMSAAA AAKAAECKIVLFKAWLTRMEEMYRERNRPMPDSNLKQAMLPEIAEIVDNPIGTACGFKMHINDALFYFTPGVPREFKVMV ETQILPDLKEQWPNNEAYQCSRLYTFGLSESGISDKLDALKLPQGYELGYRSSLPFIEVKLFGPKDALDERVKVMQLIYK LLESNVVSVDEPMLEHIGHMLKEKDLTLATAEQSSYGYLTSWLQSEQNIAEQSGHGWVLSAKGSETIDHSNPLAAAFALA GATREKCATDLALVTGKLNGKQFSVALSAHGGEWGMVLELNREYARQEANKVISTVAADVLRRYLEKKPMFGDYFSVTKV KEMFVPSSLVK
Sequences:
>Translated_411_residues MKIAMLSTGEEVLHGDIVDTNAAWLSSVMYEQGFALTKRSTVGDQMNALVEELLMLSFNNDVVIVNGGLGPTTDDMSAAA AAKAAECKIVLFKAWLTRMEEMYRERNRPMPDSNLKQAMLPEIAEIVDNPIGTACGFKMHINDALFYFTPGVPREFKVMV ETQILPDLKEQWPNNEAYQCSRLYTFGLSESGISDKLDALKLPQGYELGYRSSLPFIEVKLFGPKDALDERVKVMQLIYK LLESNVVSVDEPMLEHIGHMLKEKDLTLATAEQSSYGYLTSWLQSEQNIAEQSGHGWVLSAKGSETIDHSNPLAAAFALA GATREKCATDLALVTGKLNGKQFSVALSAHGGEWGMVLELNREYARQEANKVISTVAADVLRRYLEKKPMFGDYFSVTKV KEMFVPSSLVK >Mature_411_residues MKIAMLSTGEEVLHGDIVDTNAAWLSSVMYEQGFALTKRSTVGDQMNALVEELLMLSFNNDVVIVNGGLGPTTDDMSAAA AAKAAECKIVLFKAWLTRMEEMYRERNRPMPDSNLKQAMLPEIAEIVDNPIGTACGFKMHINDALFYFTPGVPREFKVMV ETQILPDLKEQWPNNEAYQCSRLYTFGLSESGISDKLDALKLPQGYELGYRSSLPFIEVKLFGPKDALDERVKVMQLIYK LLESNVVSVDEPMLEHIGHMLKEKDLTLATAEQSSYGYLTSWLQSEQNIAEQSGHGWVLSAKGSETIDHSNPLAAAFALA GATREKCATDLALVTGKLNGKQFSVALSAHGGEWGMVLELNREYARQEANKVISTVAADVLRRYLEKKPMFGDYFSVTKV KEMFVPSSLVK
Specific function: Unknown
COG id: COG1058
COG function: function code R; Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CinA family [H]
Homologues:
Organism=Escherichia coli, GI1788583, Length=418, Percent_Identity=37.799043062201, Blast_Score=266, Evalue=2e-72, Organism=Saccharomyces cerevisiae, GI6323832, Length=264, Percent_Identity=25.3787878787879, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008135 - InterPro: IPR020817 - InterPro: IPR001453 [H]
Pfam domain/function: PF00994 MoCF_biosynth [H]
EC number: NA
Molecular weight: Translated: 45604; Mature: 45604
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIAMLSTGEEVLHGDIVDTNAAWLSSVMYEQGFALTKRSTVGDQMNALVEELLMLSFNN CEEEEECCCHHHHCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCCCC DVVIVNGGLGPTTDDMSAAAAAKAAECKIVLFKAWLTRMEEMYRERNRPMPDSNLKQAML CEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH PEIAEIVDNPIGTACGFKMHINDALFYFTPGVPREFKVMVETQILPDLKEQWPNNEAYQC HHHHHHHCCCCCCCCCEEEEECCEEEEECCCCCHHHEEEEHHHHCHHHHHHCCCCCCCEE SRLYTFGLSESGISDKLDALKLPQGYELGYRSSLPFIEVKLFGPKDALDERVKVMQLIYK HEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH LLESNVVSVDEPMLEHIGHMLKEKDLTLATAEQSSYGYLTSWLQSEQNIAEQSGHGWVLS HHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEE AKGSETIDHSNPLAAAFALAGATREKCATDLALVTGKLNGKQFSVALSAHGGEWGMVLEL CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHEEECCCCCEEEEEEEECCCCEEEEEEE NREYARQEANKVISTVAADVLRRYLEKKPMFGDYFSVTKVKEMFVPSSLVK CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCC >Mature Secondary Structure MKIAMLSTGEEVLHGDIVDTNAAWLSSVMYEQGFALTKRSTVGDQMNALVEELLMLSFNN CEEEEECCCHHHHCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCCCC DVVIVNGGLGPTTDDMSAAAAAKAAECKIVLFKAWLTRMEEMYRERNRPMPDSNLKQAML CEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH PEIAEIVDNPIGTACGFKMHINDALFYFTPGVPREFKVMVETQILPDLKEQWPNNEAYQC HHHHHHHCCCCCCCCCEEEEECCEEEEECCCCCHHHEEEEHHHHCHHHHHHCCCCCCCEE SRLYTFGLSESGISDKLDALKLPQGYELGYRSSLPFIEVKLFGPKDALDERVKVMQLIYK HEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH LLESNVVSVDEPMLEHIGHMLKEKDLTLATAEQSSYGYLTSWLQSEQNIAEQSGHGWVLS HHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEE AKGSETIDHSNPLAAAFALAGATREKCATDLALVTGKLNGKQFSVALSAHGGEWGMVLEL CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHEEECCCCCEEEEEEEECCCCEEEEEEE NREYARQEANKVISTVAADVLRRYLEKKPMFGDYFSVTKVKEMFVPSSLVK CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA