Click here to switch to the map view.

The map label for this gene is ybaO [H]

Identifier: 37679318

GI number: 37679318

Start: 1142048

End: 1142509

Strand: Direct

Name: ybaO [H]

Synonym: VV1134

Alternate gene names: 37679318

Gene position: 1142048-1142509 (Clockwise)

Preceding gene: 37679317

Following gene: 37679319

Centisome position: 34.05

GC content: 43.29

Gene sequence:

>462_bases
ATGCTGGATAAAGTTGATCTAAAGCTACTTTCGCTATTGCAGCAGGATGGCACCTTGTCCTTGAGTGACTTGGCTGAGCA
AGTGAATCTCACCACGACACCTTGCTGGAAGCGTCTAAAGCGTTTAGAAGATGAAGGCTTCATTGAAAAGAGAGTGGCTT
TGCTGAATGCAGAGAAATTGGATCTCTCATTTATCGCATTTGTGCAAATTAAAACCTGTGATCACTCTTATGCGTGGTAT
GACCGTTTCGTTGCGACGGTAAACGATTTTCCGGAAGTGATGGAGTTCTATCGCATGGCGGGTGAGTACGACTACATGAT
GAAAGTGTTGGTTAAAGATATGAAAAACTTCGATACTTTTTATAAGAAGTTAGTCAATAGCGTTGAAGGGATATCCAACG
TCACCTCGACATTTGCGATGGAACCACTCAAATACACCACCGCGCTACCACTTGGTCAATGA

Upstream 100 bases:

>100_bases
AACAAAGTACCTACCTTTGCAGAGAAAAGCTTTGCTTTTTATGTGGTGATGTCTCTATATTGTAGAAAATTTTTCTATAA
TTGAGAGGATTGATAATTGT

Downstream 100 bases:

>100_bases
TGGAAGAGATGCATAAGTTTCGATGGCACATAAATTGGTGTTACCAATTGAACCTATCTGTATCAAAGATAAGAATTTTA
AATGAACAATGTTCACAATA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MLDKVDLKLLSLLQQDGTLSLSDLAEQVNLTTTPCWKRLKRLEDEGFIEKRVALLNAEKLDLSFIAFVQIKTCDHSYAWY
DRFVATVNDFPEVMEFYRMAGEYDYMMKVLVKDMKNFDTFYKKLVNSVEGISNVTSTFAMEPLKYTTALPLGQ

Sequences:

>Translated_153_residues
MLDKVDLKLLSLLQQDGTLSLSDLAEQVNLTTTPCWKRLKRLEDEGFIEKRVALLNAEKLDLSFIAFVQIKTCDHSYAWY
DRFVATVNDFPEVMEFYRMAGEYDYMMKVLVKDMKNFDTFYKKLVNSVEGISNVTSTFAMEPLKYTTALPLGQ
>Mature_153_residues
MLDKVDLKLLSLLQQDGTLSLSDLAEQVNLTTTPCWKRLKRLEDEGFIEKRVALLNAEKLDLSFIAFVQIKTCDHSYAWY
DRFVATVNDFPEVMEFYRMAGEYDYMMKVLVKDMKNFDTFYKKLVNSVEGISNVTSTFAMEPLKYTTALPLGQ

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=66.887417218543, Blast_Score=211, Evalue=2e-56,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=32.4324324324324, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17705; Mature: 17705

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKVDLKLLSLLQQDGTLSLSDLAEQVNLTTTPCWKRLKRLEDEGFIEKRVALLNAEKL
CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
DLSFIAFVQIKTCDHSYAWYDRFVATVNDFPEVMEFYRMAGEYDYMMKVLVKDMKNFDTF
CHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YKKLVNSVEGISNVTSTFAMEPLKYTTALPLGQ
HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure
MLDKVDLKLLSLLQQDGTLSLSDLAEQVNLTTTPCWKRLKRLEDEGFIEKRVALLNAEKL
CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
DLSFIAFVQIKTCDHSYAWYDRFVATVNDFPEVMEFYRMAGEYDYMMKVLVKDMKNFDTF
CHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YKKLVNSVEGISNVTSTFAMEPLKYTTALPLGQ
HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]