| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is menE [H]
Identifier: 37679304
GI number: 37679304
Start: 1128311
End: 1129804
Strand: Direct
Name: menE [H]
Synonym: VV1120
Alternate gene names: 37679304
Gene position: 1128311-1129804 (Clockwise)
Preceding gene: 37679303
Following gene: 37679305
Centisome position: 33.64
GC content: 50.0
Gene sequence:
>1494_bases ATGGCCGAAATGCTCGCTGCCGATCGCCTCGTTAGAAGAACAGCAATTGGTGTGGCATTCATAATGGGTGAAAAGGCATT GGTCAGTGAACAACCATTGTGGAAATATTGGGCTCAGCAGAGCCCATTTTCTATGGCGCTGAACTCATCACGTTATCAAT TCAACTGGCAACAATTGAACGACGAGATTGAACGTTTAGCGGCGGTTCTTGGTGCGCAAGGGGTGAGTCGTGGAGATGTC ATCACTCTGCTGGGTAAAAACCATGTTGATATGGTGCTTATCTTGCTCGCTGCGCATCAACTGGGGGCTGTGGTGGCGAT CATCATGCCGCAATCAATTGCAATGTTCTCAGCAAAGCTTGATACGCTTTACCGTGAGCAGCAAACGCGCTTTATTTGGC TTGATCCTAACGTTGATGTGCAGACCCGCTCGGCTTGCTCTCACGATCGTCGTAATGTACTGCTAGAAATCTCACTCGCC TCGGATCATCTTAACTCGATGCCTAGCAACCACGTTTGCGATTATCGCGCCGATCAACTTGCTACCATCATTTTTACCTC TGGTTCCACGGGCAATCCCAAAGCGGTGGCTCATACTCATCGGCAGCATTTCGCGTCAGCACAAGGATTGTTAGAAGAGT TCTGTTTTACTCAGCAAGATACATGGTTGCTCTCCCTGCCGCTGTATCATGTTTCTGGCATGGCTATTATTTATCGCTGG TTGTTGGCTGGCGCATGTTTGAAAGTGGGGCATGGCACTTTGTCTGAGGACATTCAAGGGGTGACCCACGCGTCTCTCGT CGCGACTCAATTGAAACGCCTGCTTGATGACAACACGCCTTTGCAACTGAGCCATGTTTTGCTGGGGGGGAGCCATGTGG AGCATGCCTTGGCCCGAGCGGCGCAGCGTAAAGGAATAGAGACCTGGCTAGGCTACGGCATGACAGAGGCCGCTTCAACC GTGACCGCCAAGCAGATCGACAGCGTGAGCAACGCAGGGCATCTATTGAAAAATCGAGCACTGCAACTGATTGGTCAGCG CATTTATATCGGTGGTGAAACCTTGGCAGAAGGCTATTTCTTTCAGGGTAGCTTAACGACGCTGGTGGATGAGCATGGGT GGTTTGACAGTAAAGATTTAGGCGTCTGGCAAGGTGAGGAGCTTAAGATCATCGGCCGTGCGGACAATCAGTTTATCTCT GGCGGGGAAAACATCCACTGCGAAGAGATTGAAGCGGTGCTAAACGAGATTGAAGGTGTGGAACAGAGTATCGTGGTTCC CATGCCCGATGCAGAATTTGGCTATCGACCAGTTGCTGTCATCCAATCGCCATCGCTAGCAAACAGAGCGCAGTATGAGC AACACTTAAAAGAGAAACTGCAAAAGTTTAAGTGGCCAGTTGCCTATTACTTAATGCCTCTGACGCTACTGCAGGAAGGG ATTAAAGTCTCGCGGCAAGCCGTTAAAGCATGGCTGGAAAATCAACTTAGTTGA
Upstream 100 bases:
>100_bases TAGGGCTTACCCAGTTAGCGCGTTTTGCCAAATGGCAGTTGCCTGACGTGACGCCGGGCTTGGACACCATAAGTTTGTTC CAATCGCAGTTAATGGTGGG
Downstream 100 bases:
>100_bases TTTCGACATGAATTAGTCAAAAAGAGAATTTCTCAACCTTATAACCCTCAATCATAATTGCGCATCATATGACAAAGAAA AGGCATAAGGTTGAAGATGG
Product: O-succinylbenzoic acid--CoA ligase
Products: NA
Alternate protein names: o-succinylbenzoyl-CoA synthetase; OSB-CoA synthetase [H]
Number of amino acids: Translated: 497; Mature: 496
Protein sequence:
>497_residues MAEMLAADRLVRRTAIGVAFIMGEKALVSEQPLWKYWAQQSPFSMALNSSRYQFNWQQLNDEIERLAAVLGAQGVSRGDV ITLLGKNHVDMVLILLAAHQLGAVVAIIMPQSIAMFSAKLDTLYREQQTRFIWLDPNVDVQTRSACSHDRRNVLLEISLA SDHLNSMPSNHVCDYRADQLATIIFTSGSTGNPKAVAHTHRQHFASAQGLLEEFCFTQQDTWLLSLPLYHVSGMAIIYRW LLAGACLKVGHGTLSEDIQGVTHASLVATQLKRLLDDNTPLQLSHVLLGGSHVEHALARAAQRKGIETWLGYGMTEAAST VTAKQIDSVSNAGHLLKNRALQLIGQRIYIGGETLAEGYFFQGSLTTLVDEHGWFDSKDLGVWQGEELKIIGRADNQFIS GGENIHCEEIEAVLNEIEGVEQSIVVPMPDAEFGYRPVAVIQSPSLANRAQYEQHLKEKLQKFKWPVAYYLMPLTLLQEG IKVSRQAVKAWLENQLS
Sequences:
>Translated_497_residues MAEMLAADRLVRRTAIGVAFIMGEKALVSEQPLWKYWAQQSPFSMALNSSRYQFNWQQLNDEIERLAAVLGAQGVSRGDV ITLLGKNHVDMVLILLAAHQLGAVVAIIMPQSIAMFSAKLDTLYREQQTRFIWLDPNVDVQTRSACSHDRRNVLLEISLA SDHLNSMPSNHVCDYRADQLATIIFTSGSTGNPKAVAHTHRQHFASAQGLLEEFCFTQQDTWLLSLPLYHVSGMAIIYRW LLAGACLKVGHGTLSEDIQGVTHASLVATQLKRLLDDNTPLQLSHVLLGGSHVEHALARAAQRKGIETWLGYGMTEAAST VTAKQIDSVSNAGHLLKNRALQLIGQRIYIGGETLAEGYFFQGSLTTLVDEHGWFDSKDLGVWQGEELKIIGRADNQFIS GGENIHCEEIEAVLNEIEGVEQSIVVPMPDAEFGYRPVAVIQSPSLANRAQYEQHLKEKLQKFKWPVAYYLMPLTLLQEG IKVSRQAVKAWLENQLS >Mature_496_residues AEMLAADRLVRRTAIGVAFIMGEKALVSEQPLWKYWAQQSPFSMALNSSRYQFNWQQLNDEIERLAAVLGAQGVSRGDVI TLLGKNHVDMVLILLAAHQLGAVVAIIMPQSIAMFSAKLDTLYREQQTRFIWLDPNVDVQTRSACSHDRRNVLLEISLAS DHLNSMPSNHVCDYRADQLATIIFTSGSTGNPKAVAHTHRQHFASAQGLLEEFCFTQQDTWLLSLPLYHVSGMAIIYRWL LAGACLKVGHGTLSEDIQGVTHASLVATQLKRLLDDNTPLQLSHVLLGGSHVEHALARAAQRKGIETWLGYGMTEAASTV TAKQIDSVSNAGHLLKNRALQLIGQRIYIGGETLAEGYFFQGSLTTLVDEHGWFDSKDLGVWQGEELKIIGRADNQFISG GENIHCEEIEAVLNEIEGVEQSIVVPMPDAEFGYRPVAVIQSPSLANRAQYEQHLKEKLQKFKWPVAYYLMPLTLLQEGI KVSRQAVKAWLENQLS
Specific function: Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl- CoA (OSB-CoA) [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788595, Length=470, Percent_Identity=37.2340425531915, Blast_Score=294, Evalue=7e-81, Organism=Escherichia coli, GI145693145, Length=520, Percent_Identity=23.8461538461538, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1788107, Length=327, Percent_Identity=24.4648318042813, Blast_Score=62, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17558820, Length=436, Percent_Identity=24.7706422018349, Blast_Score=100, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR010192 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.26 [H]
Molecular weight: Translated: 55249; Mature: 55118
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEMLAADRLVRRTAIGVAFIMGEKALVSEQPLWKYWAQQSPFSMALNSSRYQFNWQQLN CCHHHHHHHHHHHHHHHHHEEECCHHHCCCCHHHHHHCCCCCHHHHCCCCCEEEEHHHHH DEIERLAAVLGAQGVSRGDVITLLGKNHVDMVLILLAAHQLGAVVAIIMPQSIAMFSAKL HHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHH DTLYREQQTRFIWLDPNVDVQTRSACSHDRRNVLLEISLASDHLNSMPSNHVCDYRADQL HHHHHHCCCEEEEECCCCCCCCCHHHCCCCCCEEEEEEECHHHHHCCCCCCCCCCCCCCE ATIIFTSGSTGNPKAVAHTHRQHFASAQGLLEEFCFTQQDTWLLSLPLYHVSGMAIIYRW EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHH LLAGACLKVGHGTLSEDIQGVTHASLVATQLKRLLDDNTPLQLSHVLLGGSHVEHALARA HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCHHHHHHHHHH AQRKGIETWLGYGMTEAASTVTAKQIDSVSNAGHLLKNRALQLIGQRIYIGGETLAEGYF HHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHCCEE FQGSLTTLVDEHGWFDSKDLGVWQGEELKIIGRADNQFISGGENIHCEEIEAVLNEIEGV ECCCHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHCCC EQSIVVPMPDAEFGYRPVAVIQSPSLANRAQYEQHLKEKLQKFKWPVAYYLMPLTLLQEG CCEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IKVSRQAVKAWLENQLS HHHHHHHHHHHHHHCCC >Mature Secondary Structure AEMLAADRLVRRTAIGVAFIMGEKALVSEQPLWKYWAQQSPFSMALNSSRYQFNWQQLN CHHHHHHHHHHHHHHHHHEEECCHHHCCCCHHHHHHCCCCCHHHHCCCCCEEEEHHHHH DEIERLAAVLGAQGVSRGDVITLLGKNHVDMVLILLAAHQLGAVVAIIMPQSIAMFSAKL HHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHH DTLYREQQTRFIWLDPNVDVQTRSACSHDRRNVLLEISLASDHLNSMPSNHVCDYRADQL HHHHHHCCCEEEEECCCCCCCCCHHHCCCCCCEEEEEEECHHHHHCCCCCCCCCCCCCCE ATIIFTSGSTGNPKAVAHTHRQHFASAQGLLEEFCFTQQDTWLLSLPLYHVSGMAIIYRW EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHH LLAGACLKVGHGTLSEDIQGVTHASLVATQLKRLLDDNTPLQLSHVLLGGSHVEHALARA HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCHHHHHHHHHH AQRKGIETWLGYGMTEAASTVTAKQIDSVSNAGHLLKNRALQLIGQRIYIGGETLAEGYF HHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHCCEE FQGSLTTLVDEHGWFDSKDLGVWQGEELKIIGRADNQFISGGENIHCEEIEAVLNEIEGV ECCCHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHCCC EQSIVVPMPDAEFGYRPVAVIQSPSLANRAQYEQHLKEKLQKFKWPVAYYLMPLTLLQEG CCEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IKVSRQAVKAWLENQLS HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11677609; 8206837 [H]