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The map label for this gene is ompR [H]

Identifier: 37679274

GI number: 37679274

Start: 1092951

End: 1093679

Strand: Direct

Name: ompR [H]

Synonym: VV1090

Alternate gene names: 37679274

Gene position: 1092951-1093679 (Clockwise)

Preceding gene: 37679273

Following gene: 37679275

Centisome position: 32.58

GC content: 50.48

Gene sequence:

>729_bases
ATGCAGGATGTAACTCGAATTTTAGTGGTGGACGACGATAGCGAAATTCGCGAACTGCTGGATGAGTATTTGAGCCGCAA
CGGATACCAAGTGGCGACGGTGGCGGATGGGCATCAGTTAAAGCACTACCTTGCAGAAAACGGCTATCCAGAATTAGTCC
TGCTCGACATCATGCTTCCCGGTGAAGACGGCTTCAGCCTATGCCAATTTATGCGCCGTGAATCGACTGTGCCGATCATC
ATGCTAACGGCGGTCTCGGAAGAGACAGACCAAATCATCGGTTTGGAGATCGGTGCCGATGATTACATTGCCAAGCCCTT
TAACCCACGCCATTTGGTGGCGCGCATAAAAGCGGTTTTACGCCGCGTGCACGTCACGCAGGAGAAGCCAAGTGACACGC
TGCCAAAGCAGATTGTTTTTGGTGATTGGCGGTTGGATACGTTAGCGCACCGTATTGTTCATCAAGAAAATGGTCAACAA
CACGAACTGTCAGGCAGTGATTTTGCTTTGCTGATGCTGTTTTTGACCCATCCCGATGAAATCCTCGATCGTGACACCAT
TTCTTATGCCACTAAGGGGCGTGAGTCGTTGCCTTTTGAGCGCGGTATTGATGTTCAACTGTCACGTTTACGTCAACGCC
TGGGCGACAGTGCGCGCTACCCACACTACATCAAAACCATGCGCGGGAATGGCTATATTTTGTCGGTGCCTGTTAGCTAC
GAACATTGA

Upstream 100 bases:

>100_bases
GCTCCAGATCAGCTTCAAAAATTATTAAAACTTTCGTCAGTGGTTCGCGTTGAAATCGATACACTATGTAAATAAGTTGT
AATTTTTTGGATGAGCTCAG

Downstream 100 bases:

>100_bases
GGTGATTGGAGATGAAGAGGTTTCGCCCCAACTCCTTGGTTGCCAGAACGCTGTTGCTCACCTTGCTCGCGGTGGTGATA
GCTCAAGGGATCGCCACCGC

Product: DNA-binding response regulator GltR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MQDVTRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDGFSLCQFMRRESTVPII
MLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLRRVHVTQEKPSDTLPKQIVFGDWRLDTLAHRIVHQENGQQ
HELSGSDFALLMLFLTHPDEILDRDTISYATKGRESLPFERGIDVQLSRLRQRLGDSARYPHYIKTMRGNGYILSVPVSY
EH

Sequences:

>Translated_242_residues
MQDVTRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDGFSLCQFMRRESTVPII
MLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLRRVHVTQEKPSDTLPKQIVFGDWRLDTLAHRIVHQENGQQ
HELSGSDFALLMLFLTHPDEILDRDTISYATKGRESLPFERGIDVQLSRLRQRLGDSARYPHYIKTMRGNGYILSVPVSY
EH
>Mature_242_residues
MQDVTRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDGFSLCQFMRRESTVPII
MLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLRRVHVTQEKPSDTLPKQIVFGDWRLDTLAHRIVHQENGQQ
HELSGSDFALLMLFLTHPDEILDRDTISYATKGRESLPFERGIDVQLSRLRQRLGDSARYPHYIKTMRGNGYILSVPVSY
EH

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=239, Percent_Identity=46.0251046025105, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1786599, Length=233, Percent_Identity=38.1974248927039, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI2367329, Length=234, Percent_Identity=38.034188034188, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1788394, Length=231, Percent_Identity=35.0649350649351, Blast_Score=137, Evalue=4e-34,
Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=34.7826086956522, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI145693140, Length=241, Percent_Identity=37.344398340249, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787229, Length=234, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1786784, Length=233, Percent_Identity=32.618025751073, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=32.8947368421053, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1786911, Length=231, Percent_Identity=34.6320346320346, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790860, Length=229, Percent_Identity=32.3144104803493, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787375, Length=233, Percent_Identity=28.3261802575107, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1790552, Length=230, Percent_Identity=31.304347826087, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789402, Length=233, Percent_Identity=31.3304721030043, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788550, Length=109, Percent_Identity=33.9449541284404, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790299, Length=112, Percent_Identity=35.7142857142857, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27698; Mature: 27698

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDVTRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLP
CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEEEC
GEDGFSLCQFMRRESTVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVL
CCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
RRVHVTQEKPSDTLPKQIVFGDWRLDTLAHRIVHQENGQQHELSGSDFALLMLFLTHPDE
HHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHH
ILDRDTISYATKGRESLPFERGIDVQLSRLRQRLGDSARYPHYIKTMRGNGYILSVPVSY
HHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHEEECCCCEEEEECCCC
EH
CC
>Mature Secondary Structure
MQDVTRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLP
CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEEEC
GEDGFSLCQFMRRESTVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVL
CCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
RRVHVTQEKPSDTLPKQIVFGDWRLDTLAHRIVHQENGQQHELSGSDFALLMLFLTHPDE
HHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHH
ILDRDTISYATKGRESLPFERGIDVQLSRLRQRLGDSARYPHYIKTMRGNGYILSVPVSY
HHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHEEECCCCEEEEECCCC
EH
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]