| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is feoB [H]
Identifier: 37679225
GI number: 37679225
Start: 1043806
End: 1046091
Strand: Direct
Name: feoB [H]
Synonym: VV1041
Alternate gene names: 37679225
Gene position: 1043806-1046091 (Clockwise)
Preceding gene: 37679224
Following gene: 37679226
Centisome position: 31.12
GC content: 48.38
Gene sequence:
>2286_bases GTGCCAATAATGCAGTATCAAATTCTGACGGTCGGTAATCCTAACAGTGGAAAAACGACGTTATTTAACGGTTTGACTGG CGCGAAACAGCAAGTGGGCAACTGGGCTGGCGTCACGGTAGAAAAGAAAACCGGTCGTTACCATCACGCTGGTGATGAAT TTTTGCTGACAGATCTTCCGGGTATCTACTCGCTGGATAGTGGTAATGACAGCAATAGTATTGATGAATCCATTGCTTCC CGTGCGGTATTAACTCACCCAGCCGATATGATCATCAATGTGGTGGACGCAACGAGCCTTGAGCGCAGCTTATACATGAC ACTGCAATTGCGCGAACTTGGCCGTCCGATGATTGTTGTGTTGAATAAAATGGATGCGCTTAAACGTGAGCGTCAGATCA TCAATGTGGCTGAGTTAGAAAAAAGCCTCGGTTGCCCGGTGATCAGTTTATCCGCAACGAACAAAGCACAAGTCGCGGAG TTTAAAGAGAAACTGCACAAATCTGTGGTTCAAGGTGTGGCACTAAAAGAGATTGCTTTGAACTATGGTCAGGCGATGGA AGCGGCGATTGATAGCATTTCAACGCTATTTAACGATCAAACGGTTTCCCACCGAGCACTCGCTGTTCGTGCTCTCGAGA AAGACGCTCTGGTACTAAACAGTATGTCTGATGTGGATCGCCTCCGTGTTGAAGAAGTCGTGACGGAATTAAATCTGGAT GTGGACTTACACGTTGCTGACGTCAAATATACGCATCTTCATCAGGAGTGCAAAAAGGTCCGTCGTAGCGAAGGTAAGTT AAGCCGCAGTGTCACTGAAAAGCTGGACCAATTTATTCTAAACAAATGGGTCGGTATTCCGTTCTTCTTCGTTGTGATGT ACCTCATGTTCATGTTCTCTATCAACATTGGTAGTGCCTTTATTGACTTCTTTGATATCGGTGTCGGTGCACTACTGGTT GATGGAGGCCACCACTTGTTAGACGGACACTTGCCGGTGTGGTTGGTGACGGTACTGGCAGATGGACTCGGTGGTGGTAT CCAGACGGTGGCGACTTTCATTCCGGTTATCGCCTGTTTGTACCTTTTCCTCGCTGTGCTTGAAAGCTCAGGCTACATGG CTCGTGCCGCGTTTGTGCTTGATAAAGTGATGCAGAAGATCGGCCTGCCGGGTAAAGCTTTTGTACCACTGGTTTTAGGT TTCGGCTGTAACGTGCCATCCATTATGGCCACGCGTACACTAGACCAAGAGCGTGAACGTAAACTGGCAGCATCAATGGC GCCATTTATGTCTTGTGGTGCTCGCTTGCCTGTGTATGCGCTATTTGCTGCCGCCTTTTTCCCAGGTGCTGGGCAAAATA TTGTGTTTGCGCTTTACCTACTTGGTATCGTCGCGGCGATTTTCACGGGTCTCTTCCTTAAGCACACTCTGTACCCGGGT AGCAGTGACAGCTTAGTGATGGAGATGCCCGATTACGAACTGCCAACACTGCAAAACGTGGTGATCAAAACATGGCAAAA ACTGAAGCGTTTCGTTTTGGGAGCAGGCAAAACCATCGTTGTTGTGGTTGCGATCCTAAGTTTCTTAAACTCGCTTGGTA CCGATGGCAGCTTCGGCAACGAAGACAGCGAAAACTCGGTTCTGTCAAAAGCCGCACAAGTGGTAACGCCCGTGTTTGCT CCGATTGGCATCGAGAAAGACAACTGGCCAGCGACAGTCGGTATCATCACAGGTATCTTCGCCAAAGAGGCGGTAGTGGG TACGCTTAATAGTCTATACACCACACCAAGTGATGGAGAAGAAGCAGAGTTTGATCTGATGGCCAGCCTAGAAGAGGCCG TGATGAGTATCCCTGAAAACTTAGCGGGTTTGAGCTATTCAGATCCATTGGGTATCGAGGTGGGAGATCTAACGGATTCA AATGCTGTGGCAGAGGAACAAGATGTCGATGCTTCTATCTTTGGTAACCTTAAAGCGCAGTTTGCGTCTGGTCATGCGGC TTTTGCCTACCTCATTTTTATTTTGTTGTACACCCCATGTGTGGCAGCGATGGGGGCATACGTTCGCGAATTCGGTCATA AGTTTGCACGCTTTATTGCCGTTTGGACGATGGCTCTGGCCTACCTTTGTGCGACCTTCTACAATCAATTGACACACTTT GCGGATAGCCCTGTCACCAGTGGTATTTGGATCGCAGCGATTGTCGCCATTTTCTTTGCCACGTATCGTGTGTTTAAGCG CGTAGGTGACAAGCAACGAGGCATATTTGAGGCGCAGGTAGCATGA
Upstream 100 bases:
>100_bases GACTTATTCGTCGAGCTCCAATGGGTGATCCACTACAAATAGAAGCTCGTGGTGTATCGTTAGCGGTGCGAGAAAAAATT GCGGAAGCCATCGAAGTGGA
Downstream 100 bases:
>100_bases TATTAAAAGAGCTTTATCAATATATTGCAGACAAAGGAACCGTCTCTCAGTCAGATCTGGCTAAGCAGTTTGGGATGAGT GAAGATGGCGCTGATGCGAT
Product: Fe2+ transport system protein B
Products: Fe (II) [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 761; Mature: 760
Protein sequence:
>761_residues MPIMQYQILTVGNPNSGKTTLFNGLTGAKQQVGNWAGVTVEKKTGRYHHAGDEFLLTDLPGIYSLDSGNDSNSIDESIAS RAVLTHPADMIINVVDATSLERSLYMTLQLRELGRPMIVVLNKMDALKRERQIINVAELEKSLGCPVISLSATNKAQVAE FKEKLHKSVVQGVALKEIALNYGQAMEAAIDSISTLFNDQTVSHRALAVRALEKDALVLNSMSDVDRLRVEEVVTELNLD VDLHVADVKYTHLHQECKKVRRSEGKLSRSVTEKLDQFILNKWVGIPFFFVVMYLMFMFSINIGSAFIDFFDIGVGALLV DGGHHLLDGHLPVWLVTVLADGLGGGIQTVATFIPVIACLYLFLAVLESSGYMARAAFVLDKVMQKIGLPGKAFVPLVLG FGCNVPSIMATRTLDQERERKLAASMAPFMSCGARLPVYALFAAAFFPGAGQNIVFALYLLGIVAAIFTGLFLKHTLYPG SSDSLVMEMPDYELPTLQNVVIKTWQKLKRFVLGAGKTIVVVVAILSFLNSLGTDGSFGNEDSENSVLSKAAQVVTPVFA PIGIEKDNWPATVGIITGIFAKEAVVGTLNSLYTTPSDGEEAEFDLMASLEEAVMSIPENLAGLSYSDPLGIEVGDLTDS NAVAEEQDVDASIFGNLKAQFASGHAAFAYLIFILLYTPCVAAMGAYVREFGHKFARFIAVWTMALAYLCATFYNQLTHF ADSPVTSGIWIAAIVAIFFATYRVFKRVGDKQRGIFEAQVA
Sequences:
>Translated_761_residues MPIMQYQILTVGNPNSGKTTLFNGLTGAKQQVGNWAGVTVEKKTGRYHHAGDEFLLTDLPGIYSLDSGNDSNSIDESIAS RAVLTHPADMIINVVDATSLERSLYMTLQLRELGRPMIVVLNKMDALKRERQIINVAELEKSLGCPVISLSATNKAQVAE FKEKLHKSVVQGVALKEIALNYGQAMEAAIDSISTLFNDQTVSHRALAVRALEKDALVLNSMSDVDRLRVEEVVTELNLD VDLHVADVKYTHLHQECKKVRRSEGKLSRSVTEKLDQFILNKWVGIPFFFVVMYLMFMFSINIGSAFIDFFDIGVGALLV DGGHHLLDGHLPVWLVTVLADGLGGGIQTVATFIPVIACLYLFLAVLESSGYMARAAFVLDKVMQKIGLPGKAFVPLVLG FGCNVPSIMATRTLDQERERKLAASMAPFMSCGARLPVYALFAAAFFPGAGQNIVFALYLLGIVAAIFTGLFLKHTLYPG SSDSLVMEMPDYELPTLQNVVIKTWQKLKRFVLGAGKTIVVVVAILSFLNSLGTDGSFGNEDSENSVLSKAAQVVTPVFA PIGIEKDNWPATVGIITGIFAKEAVVGTLNSLYTTPSDGEEAEFDLMASLEEAVMSIPENLAGLSYSDPLGIEVGDLTDS NAVAEEQDVDASIFGNLKAQFASGHAAFAYLIFILLYTPCVAAMGAYVREFGHKFARFIAVWTMALAYLCATFYNQLTHF ADSPVTSGIWIAAIVAIFFATYRVFKRVGDKQRGIFEAQVA >Mature_760_residues PIMQYQILTVGNPNSGKTTLFNGLTGAKQQVGNWAGVTVEKKTGRYHHAGDEFLLTDLPGIYSLDSGNDSNSIDESIASR AVLTHPADMIINVVDATSLERSLYMTLQLRELGRPMIVVLNKMDALKRERQIINVAELEKSLGCPVISLSATNKAQVAEF KEKLHKSVVQGVALKEIALNYGQAMEAAIDSISTLFNDQTVSHRALAVRALEKDALVLNSMSDVDRLRVEEVVTELNLDV DLHVADVKYTHLHQECKKVRRSEGKLSRSVTEKLDQFILNKWVGIPFFFVVMYLMFMFSINIGSAFIDFFDIGVGALLVD GGHHLLDGHLPVWLVTVLADGLGGGIQTVATFIPVIACLYLFLAVLESSGYMARAAFVLDKVMQKIGLPGKAFVPLVLGF GCNVPSIMATRTLDQERERKLAASMAPFMSCGARLPVYALFAAAFFPGAGQNIVFALYLLGIVAAIFTGLFLKHTLYPGS SDSLVMEMPDYELPTLQNVVIKTWQKLKRFVLGAGKTIVVVVAILSFLNSLGTDGSFGNEDSENSVLSKAAQVVTPVFAP IGIEKDNWPATVGIITGIFAKEAVVGTLNSLYTTPSDGEEAEFDLMASLEEAVMSIPENLAGLSYSDPLGIEVGDLTDSN AVAEEQDVDASIFGNLKAQFASGHAAFAYLIFILLYTPCVAAMGAYVREFGHKFARFIAVWTMALAYLCATFYNQLTHFA DSPVTSGIWIAAIVAIFFATYRVFKRVGDKQRGIFEAQVA
Specific function: Fe(2+) uptake system, probably driven by GTP [H]
COG id: COG0370
COG function: function code P; Fe2+ transport system protein B
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the feoB (TC 9.A.8) family [H]
Homologues:
Organism=Escherichia coli, GI1789813, Length=755, Percent_Identity=42.5165562913907, Blast_Score=547, Evalue=1e-157,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003373 - InterPro: IPR011640 - InterPro: IPR011619 - InterPro: IPR011642 - InterPro: IPR006073 [H]
Pfam domain/function: PF07664 FeoB_C; PF02421 FeoB_N; PF07670 Gate [H]
EC number: NA
Molecular weight: Translated: 82821; Mature: 82690
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIMQYQILTVGNPNSGKTTLFNGLTGAKQQVGNWAGVTVEKKTGRYHHAGDEFLLTDLP CCCEEEEEEEECCCCCCCEEEECCCCHHHHHCCCCCCEEEECCCCCCCCCCCCEEEECCC GIYSLDSGNDSNSIDESIASRAVLTHPADMIINVVDATSLERSLYMTLQLRELGRPMIVV CCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE LNKMDALKRERQIINVAELEKSLGCPVISLSATNKAQVAEFKEKLHKSVVQGVALKEIAL HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NYGQAMEAAIDSISTLFNDQTVSHRALAVRALEKDALVLNSMSDVDRLRVEEVVTELNLD HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC VDLHVADVKYTHLHQECKKVRRSEGKLSRSVTEKLDQFILNKWVGIPFFFVVMYLMFMFS EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH INIGSAFIDFFDIGVGALLVDGGHHLLDGHLPVWLVTVLADGLGGGIQTVATFIPVIACL HHHHHHHHHHHHHCCHHEEECCCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH YLFLAVLESSGYMARAAFVLDKVMQKIGLPGKAFVPLVLGFGCNVPSIMATRTLDQERER HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH KLAASMAPFMSCGARLPVYALFAAAFFPGAGQNIVFALYLLGIVAAIFTGLFLKHTLYPG HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC SSDSLVMEMPDYELPTLQNVVIKTWQKLKRFVLGAGKTIVVVVAILSFLNSLGTDGSFGN CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC EDSENSVLSKAAQVVTPVFAPIGIEKDNWPATVGIITGIFAKEAVVGTLNSLYTTPSDGE CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EAEFDLMASLEEAVMSIPENLAGLSYSDPLGIEVGDLTDSNAVAEEQDVDASIFGNLKAQ CCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEECCCCCCCCCCHHHCCCHHHHHHHHHH FASGHAAFAYLIFILLYTPCVAAMGAYVREFGHKFARFIAVWTMALAYLCATFYNQLTHF HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADSPVTSGIWIAAIVAIFFATYRVFKRVGDKQRGIFEAQVA CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCEECCCC >Mature Secondary Structure PIMQYQILTVGNPNSGKTTLFNGLTGAKQQVGNWAGVTVEKKTGRYHHAGDEFLLTDLP CCEEEEEEEECCCCCCCEEEECCCCHHHHHCCCCCCEEEECCCCCCCCCCCCEEEECCC GIYSLDSGNDSNSIDESIASRAVLTHPADMIINVVDATSLERSLYMTLQLRELGRPMIVV CCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE LNKMDALKRERQIINVAELEKSLGCPVISLSATNKAQVAEFKEKLHKSVVQGVALKEIAL HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NYGQAMEAAIDSISTLFNDQTVSHRALAVRALEKDALVLNSMSDVDRLRVEEVVTELNLD HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC VDLHVADVKYTHLHQECKKVRRSEGKLSRSVTEKLDQFILNKWVGIPFFFVVMYLMFMFS EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH INIGSAFIDFFDIGVGALLVDGGHHLLDGHLPVWLVTVLADGLGGGIQTVATFIPVIACL HHHHHHHHHHHHHCCHHEEECCCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH YLFLAVLESSGYMARAAFVLDKVMQKIGLPGKAFVPLVLGFGCNVPSIMATRTLDQERER HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH KLAASMAPFMSCGARLPVYALFAAAFFPGAGQNIVFALYLLGIVAAIFTGLFLKHTLYPG HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC SSDSLVMEMPDYELPTLQNVVIKTWQKLKRFVLGAGKTIVVVVAILSFLNSLGTDGSFGN CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC EDSENSVLSKAAQVVTPVFAPIGIEKDNWPATVGIITGIFAKEAVVGTLNSLYTTPSDGE CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EAEFDLMASLEEAVMSIPENLAGLSYSDPLGIEVGDLTDSNAVAEEQDVDASIFGNLKAQ CCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEECCCCCCCCCCHHHCCCHHHHHHHHHH FASGHAAFAYLIFILLYTPCVAAMGAYVREFGHKFARFIAVWTMALAYLCATFYNQLTHF HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADSPVTSGIWIAAIVAIFFATYRVFKRVGDKQRGIFEAQVA CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Fe (II) [Periplasm] [C]
Specific reaction: Fe (II) [Periplasm] = Fe (II) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA