Click here to switch to the map view.

The map label for this gene is flgD

Identifier: 37679146

GI number: 37679146

Start: 959974

End: 960681

Strand: Direct

Name: flgD

Synonym: VV0962

Alternate gene names: 37679146

Gene position: 959974-960681 (Clockwise)

Preceding gene: 37679145

Following gene: 37679147

Centisome position: 28.62

GC content: 46.75

Gene sequence:

>708_bases
ATGGCCGGAATCAATAACGTTGGTCAAAGCGGCTTGTCCTATATCGACCAGCTTAAGAGTTTGCAAGAGAGCAAGAAGCC
AACAGAAACAACAGGTAAACAAGAGCTTAAACAAGAAGACTTTTTATCGTTGTTGACCAAGCAGCTTGCTCAACAGGATC
CTTTTAAGCCGGTGAGTAACGACCAGATGATTGCGCAAATGGCGTCATTTGCGACCGTCGATGGCATCGGAAAGATGAAC
TCTCAGTTCGAGAGCCTCAACTCATCGATGACGTCAAACCAAGCATTACAGGCTTCTTCTTTAGTGGGTCGTGATGTTTT
GGTTCCAGGAGCGGCGGGGCTGAAGCAAGAAAATACGGGTATGCCTGCCATGGTCAAACTTCCACAAGCAATGGATAACG
TGATTGTCCGTGTGGAAAATGAAATTGGCCAACTGGTTCGTTCTTTTGAGGTAGGAGCGAAACCTGCGGGAGATAACCGT
GTTGAATGGGACGGCAACGACGAAAACGGTAATCCATTGCCGGCTGGCAAATACAAAGTGAAGGCATCAGGTTTATTGGA
TGGTCAGTCAAGTGACTTCCCAGTATCCACTTATGCCAACGTAAACAGTGTATTGCTAGGTAAAGGTGATGGTAACGTAC
TGCTCAATCTGGCTGGCTTTGATTCGCCAGTTCGACTTGCTGAAGTACTAGAAGTTGGCAAAGCGTAA

Upstream 100 bases:

>100_bases
CTTCACGAGCGTACCAAACAAACGTTCAAGTTGCAGATGCAAGTAAACAAATGCTGCTGCGTACGCTGCAGATGGGTCAA
TAGGGATAAGGAGGTAGCGT

Downstream 100 bases:

>100_bases
TTACGCTGGCTAGATTCAGGAGATTTTGGAATGTCATATGTATCTTTAAGCGGTTTGTCCGCAGCTCAGTTAGATCTGAA
TACCACGAGTAACAACATTG

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MAGINNVGQSGLSYIDQLKSLQESKKPTETTGKQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMN
SQFESLNSSMTSNQALQASSLVGRDVLVPGAAGLKQENTGMPAMVKLPQAMDNVIVRVENEIGQLVRSFEVGAKPAGDNR
VEWDGNDENGNPLPAGKYKVKASGLLDGQSSDFPVSTYANVNSVLLGKGDGNVLLNLAGFDSPVRLAEVLEVGKA

Sequences:

>Translated_235_residues
MAGINNVGQSGLSYIDQLKSLQESKKPTETTGKQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMN
SQFESLNSSMTSNQALQASSLVGRDVLVPGAAGLKQENTGMPAMVKLPQAMDNVIVRVENEIGQLVRSFEVGAKPAGDNR
VEWDGNDENGNPLPAGKYKVKASGLLDGQSSDFPVSTYANVNSVLLGKGDGNVLLNLAGFDSPVRLAEVLEVGKA
>Mature_234_residues
AGINNVGQSGLSYIDQLKSLQESKKPTETTGKQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNS
QFESLNSSMTSNQALQASSLVGRDVLVPGAAGLKQENTGMPAMVKLPQAMDNVIVRVENEIGQLVRSFEVGAKPAGDNRV
EWDGNDENGNPLPAGKYKVKASGLLDGQSSDFPVSTYANVNSVLLGKGDGNVLLNLAGFDSPVRLAEVLEVGKA

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=153, Percent_Identity=37.2549019607843, Blast_Score=106, Evalue=1e-24,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24971; Mature: 24840

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGINNVGQSGLSYIDQLKSLQESKKPTETTGKQELKQEDFLSLLTKQLAQQDPFKPVSN
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DQMIAQMASFATVDGIGKMNSQFESLNSSMTSNQALQASSLVGRDVLVPGAAGLKQENTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC
MPAMVKLPQAMDNVIVRVENEIGQLVRSFEVGAKPAGDNRVEWDGNDENGNPLPAGKYKV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEE
KASGLLDGQSSDFPVSTYANVNSVLLGKGDGNVLLNLAGFDSPVRLAEVLEVGKA
EECCEECCCCCCCCCHHHCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AGINNVGQSGLSYIDQLKSLQESKKPTETTGKQELKQEDFLSLLTKQLAQQDPFKPVSN
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DQMIAQMASFATVDGIGKMNSQFESLNSSMTSNQALQASSLVGRDVLVPGAAGLKQENTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC
MPAMVKLPQAMDNVIVRVENEIGQLVRSFEVGAKPAGDNRVEWDGNDENGNPLPAGKYKV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEE
KASGLLDGQSSDFPVSTYANVNSVLLGKGDGNVLLNLAGFDSPVRLAEVLEVGKA
EECCEECCCCCCCCCHHHCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]