| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is ptsP [H]
Identifier: 37678860
GI number: 37678860
Start: 673019
End: 675265
Strand: Direct
Name: ptsP [H]
Synonym: VV0676
Alternate gene names: 37678860
Gene position: 673019-675265 (Clockwise)
Preceding gene: 37678859
Following gene: 37678861
Centisome position: 20.06
GC content: 48.46
Gene sequence:
>2247_bases ATGCTGAGTCAACTCAGGGAGATAGTTGAAAAGGTTTCTCGTGTCGAGGATGTTCACCAAGCATTGAATACATTGGTACG AGAAACTTGCACAGCATTGAGCACAGAGTGTTGCACGATTTATCTGGCGAATGAAGAAAGGCAACGGCTAGAGCTAATGG CAACGCAAGGCCTGACTTTTCATGGCGACAGTATTCACATCCAGTTTGAAGAGGGCTTGGTTGGCTTAGTGAAACGCAGC GCCGAGCCTCTTAACTTAGCCGAAGCCTCGAAGCATCCCGCTTTTAAATATTTTCCTCAGTTAGGCGAAGAAACGTATCA CTCGTTTTTAGGTGCGCCGATTATCCATCGTAAAAAAGTATTGGGCGTGCTGGTAATCCAGCAGAAAACCCCACGACTTT TCAGCGAGATGGAAGAATCCTTCCTTGTCACTCTATCCGCTCAGTTAGCCGTCATCATTGCGCATGCACAAAGTCTTGGC CATTGGTCATTGGCGTCTAAACCTGCTGCGGTGCAGGGCATTGCCGCTTCAAGTGGGGTCGCAATTGGCGAGTTTTGGTA TGACAATTCACAGCCGATATTGTCGGAGGTGTGCCCAGCCTCGACACTCGATAAAGAGCGAGAGCAAGAGTGGTTAGCTG TTGCGATTGAAGCCGCGTTGGCGGATTTTCGCCGTATGCGCAAAAAGTTCGACAGTGAAATCAATAAAGATGCGCTGGCC ATATTCGATCTCTTCACGCACTTGCTGAACGATCCTATGTTACGTACAGACTTGAAAAAGCATGTGGAGCGCGGAGATCG CGCGGACTGGGCATTGCGTCAAGTGGTCGAAAGCTATTCCAGTCGCTTTGCACGAATGTCGGATGTTTACCTGAGAGAGC GAGCGCATGACATTCGTGAGTTAGGTCAGCGTTTACTGTTCTTTTTACACAACAGTGAGCAAGAGCAGCCAAGAATTGAG CGACCGGTAATTTTGGTTGCCAATGAACTCACCGCCTCACTTTTGGCGTCTGTGCCGAAAAAATACCTGTTGGCAGTGGT GGCATTAGAAGGCGCGGCGAACTCCCACGCTGCGATTTTATCCAGAGCGCTAGGAGTGCCTGCTGTCATGGGGGCGAACC TGAATCTGGAAGAGGTGCATGGCAAGCAGGGGATCGTCGATGGCTACTCCGGCGAGATTTATATTCAGCCTAATCGCCAG ATTTTGCGTGAGTACCGCAGCCTTGTAACGGAAGAGAGTGAATTGTTCGCGATGGTGAACAAGGAGCTTGCTCTGCCCGC GAAAACTCAGGATAACGTCGACGTCGAGGTATTACTCAACGCGGGCTTGAGCGCCGACAGTAATATCGCGATCAACGCGG GTGTGGATGGTGTGGGATTATATCGCACTGAAATTGCTTTTCTCTTGCAACATCGTTTTCCTTCTGAGGATGAGCAATAT CAGCAATATCGCGCTATTTTAAGTAGTTATCCTCAGCAGCGAGTGGTGATGCGCACCTTAGATATTGGCGGCGATAAACC GCTGCCTTACCTGCCTATTGAAGAGGATAACCCCTTTTTAGGCTGGCGTGGGATCCGTTTTACCCTAGATCATCCAGACA TCTTCCTTATCCAGTTACGAGCCATGTTACGAGCCAGTGCTGAGCATGGCAATTTGAGTATTCTCTTGCCGATGATTTCT GGTGTCGGAGAGCTTGATGACGCCATTCGTTTGATTCAGCAAGCTTATCATGAGGTCGTGTTGCTGGATGAACGAGTGGT GATGCCACAAATTGGCGTGATGATTGAAGTCCCTTCGATGGTCTATTTGATTCCATCAATTGCTCAGCGCGTGGATTTTG TCTCGGTGGGGACAAACGACTTAACGCAATATTTATTGGCTGTGGATCGGAACAATGCACGAGTTTCTGATGTCTATGAA TCGTTGCATCCAGCGGTATTGCAAGCCCTGCAGCAGATTTATCAGCAGTGTGGACAATACCACTTACCCGTTTGTATTTG TGGCGAGTTAGCGGGAGACCCATTTGGCGCATTACTGCTACTTGGTTTGGGTTACCGTAGTTTGAGCATGAACACCTCAA ACGTCGCGCGGATCAAATATTTGATTCGCCATAGCCAATTGAGCGATTTACAAGCCTTGTCTCAACAAGCTTTGTCGCTT TCTTATGGCAAGGATATTCACCAGTTGATGCGGGATTATTTTATTAATCATGATTTTGCCGGTTTTATCCGTGCAGGTAA GAAGTAG
Upstream 100 bases:
>100_bases GAGACGTTTATCGCCGAGCGATGAAGGAATTTGCATCGTTAGCCATGCCTTTTCGCGAACGTAAATTGAAAGGTAAAAAA GTTAAACGAAGAGGATAACC
Downstream 100 bases:
>100_bases GTTGCTGTGACGTTTGAATTATTAAGTGTGTTGTTGGTGCTGGGTGCGTTTGTTGGCGTGATGGCAGGGTTATTAGGCAT CGGTGGTGGTTTGATTGTGG
Product: fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain
Products: NA
Alternate protein names: Enzyme I-Ntr; Phosphotransferase system, enzyme I [H]
Number of amino acids: Translated: 748; Mature: 748
Protein sequence:
>748_residues MLSQLREIVEKVSRVEDVHQALNTLVRETCTALSTECCTIYLANEERQRLELMATQGLTFHGDSIHIQFEEGLVGLVKRS AEPLNLAEASKHPAFKYFPQLGEETYHSFLGAPIIHRKKVLGVLVIQQKTPRLFSEMEESFLVTLSAQLAVIIAHAQSLG HWSLASKPAAVQGIAASSGVAIGEFWYDNSQPILSEVCPASTLDKEREQEWLAVAIEAALADFRRMRKKFDSEINKDALA IFDLFTHLLNDPMLRTDLKKHVERGDRADWALRQVVESYSSRFARMSDVYLRERAHDIRELGQRLLFFLHNSEQEQPRIE RPVILVANELTASLLASVPKKYLLAVVALEGAANSHAAILSRALGVPAVMGANLNLEEVHGKQGIVDGYSGEIYIQPNRQ ILREYRSLVTEESELFAMVNKELALPAKTQDNVDVEVLLNAGLSADSNIAINAGVDGVGLYRTEIAFLLQHRFPSEDEQY QQYRAILSSYPQQRVVMRTLDIGGDKPLPYLPIEEDNPFLGWRGIRFTLDHPDIFLIQLRAMLRASAEHGNLSILLPMIS GVGELDDAIRLIQQAYHEVVLLDERVVMPQIGVMIEVPSMVYLIPSIAQRVDFVSVGTNDLTQYLLAVDRNNARVSDVYE SLHPAVLQALQQIYQQCGQYHLPVCICGELAGDPFGALLLLGLGYRSLSMNTSNVARIKYLIRHSQLSDLQALSQQALSL SYGKDIHQLMRDYFINHDFAGFIRAGKK
Sequences:
>Translated_748_residues MLSQLREIVEKVSRVEDVHQALNTLVRETCTALSTECCTIYLANEERQRLELMATQGLTFHGDSIHIQFEEGLVGLVKRS AEPLNLAEASKHPAFKYFPQLGEETYHSFLGAPIIHRKKVLGVLVIQQKTPRLFSEMEESFLVTLSAQLAVIIAHAQSLG HWSLASKPAAVQGIAASSGVAIGEFWYDNSQPILSEVCPASTLDKEREQEWLAVAIEAALADFRRMRKKFDSEINKDALA IFDLFTHLLNDPMLRTDLKKHVERGDRADWALRQVVESYSSRFARMSDVYLRERAHDIRELGQRLLFFLHNSEQEQPRIE RPVILVANELTASLLASVPKKYLLAVVALEGAANSHAAILSRALGVPAVMGANLNLEEVHGKQGIVDGYSGEIYIQPNRQ ILREYRSLVTEESELFAMVNKELALPAKTQDNVDVEVLLNAGLSADSNIAINAGVDGVGLYRTEIAFLLQHRFPSEDEQY QQYRAILSSYPQQRVVMRTLDIGGDKPLPYLPIEEDNPFLGWRGIRFTLDHPDIFLIQLRAMLRASAEHGNLSILLPMIS GVGELDDAIRLIQQAYHEVVLLDERVVMPQIGVMIEVPSMVYLIPSIAQRVDFVSVGTNDLTQYLLAVDRNNARVSDVYE SLHPAVLQALQQIYQQCGQYHLPVCICGELAGDPFGALLLLGLGYRSLSMNTSNVARIKYLIRHSQLSDLQALSQQALSL SYGKDIHQLMRDYFINHDFAGFIRAGKK >Mature_748_residues MLSQLREIVEKVSRVEDVHQALNTLVRETCTALSTECCTIYLANEERQRLELMATQGLTFHGDSIHIQFEEGLVGLVKRS AEPLNLAEASKHPAFKYFPQLGEETYHSFLGAPIIHRKKVLGVLVIQQKTPRLFSEMEESFLVTLSAQLAVIIAHAQSLG HWSLASKPAAVQGIAASSGVAIGEFWYDNSQPILSEVCPASTLDKEREQEWLAVAIEAALADFRRMRKKFDSEINKDALA IFDLFTHLLNDPMLRTDLKKHVERGDRADWALRQVVESYSSRFARMSDVYLRERAHDIRELGQRLLFFLHNSEQEQPRIE RPVILVANELTASLLASVPKKYLLAVVALEGAANSHAAILSRALGVPAVMGANLNLEEVHGKQGIVDGYSGEIYIQPNRQ ILREYRSLVTEESELFAMVNKELALPAKTQDNVDVEVLLNAGLSADSNIAINAGVDGVGLYRTEIAFLLQHRFPSEDEQY QQYRAILSSYPQQRVVMRTLDIGGDKPLPYLPIEEDNPFLGWRGIRFTLDHPDIFLIQLRAMLRASAEHGNLSILLPMIS GVGELDDAIRLIQQAYHEVVLLDERVVMPQIGVMIEVPSMVYLIPSIAQRVDFVSVGTNDLTQYLLAVDRNNARVSDVYE SLHPAVLQALQQIYQQCGQYHLPVCICGELAGDPFGALLLLGLGYRSLSMNTSNVARIKYLIRHSQLSDLQALSQQALSL SYGKDIHQLMRDYFINHDFAGFIRAGKK
Specific function: Component of the phosphoenolpyruvate-dependent nitrogen- metabolic phosphotransferase system (nitrogen-metabolic PTS), that seems to be involved in regulating nitrogen metabolism. Enzyme I- Ntr transfers the phosphoryl group from phosphoenolpyruvate (PEP)
COG id: COG3605
COG function: function code T; Signal transduction protein containing GAF and PtsI domains
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GAF domain [H]
Homologues:
Organism=Escherichia coli, GI1789193, Length=748, Percent_Identity=48.1283422459893, Blast_Score=727, Evalue=0.0, Organism=Escherichia coli, GI1788756, Length=578, Percent_Identity=34.6020761245675, Blast_Score=310, Evalue=2e-85, Organism=Escherichia coli, GI48994992, Length=515, Percent_Identity=33.3980582524272, Blast_Score=268, Evalue=1e-72, Organism=Escherichia coli, GI1788726, Length=582, Percent_Identity=31.9587628865979, Blast_Score=251, Evalue=1e-67, Organism=Escherichia coli, GI1787994, Length=439, Percent_Identity=25.2847380410023, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI226510935, Length=202, Percent_Identity=30.1980198019802, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003018 - InterPro: IPR008279 - InterPro: IPR006318 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR008731 - InterPro: IPR015813 [H]
Pfam domain/function: PF01590 GAF; PF05524 PEP-utilisers_N; PF00391 PEP-utilizers; PF02896 PEP-utilizers_C [H]
EC number: =2.7.3.9 [H]
Molecular weight: Translated: 83812; Mature: 83812
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSQLREIVEKVSRVEDVHQALNTLVRETCTALSTECCTIYLANEERQRLELMATQGLTF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCEE HGDSIHIQFEEGLVGLVKRSAEPLNLAEASKHPAFKYFPQLGEETYHSFLGAPIIHRKKV ECCEEEEEECCCHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH LGVLVIQQKTPRLFSEMEESFLVTLSAQLAVIIAHAQSLGHWSLASKPAAVQGIAASSGV HEEEEECCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCC AIGEFWYDNSQPILSEVCPASTLDKEREQEWLAVAIEAALADFRRMRKKFDSEINKDALA EEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH IFDLFTHLLNDPMLRTDLKKHVERGDRADWALRQVVESYSSRFARMSDVYLRERAHDIRE HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGQRLLFFLHNSEQEQPRIERPVILVANELTASLLASVPKKYLLAVVALEGAANSHAAIL HHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH SRALGVPAVMGANLNLEEVHGKQGIVDGYSGEIYIQPNRQILREYRSLVTEESELFAMVN HHHHCCCEEECCCCCHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHHH KELALPAKTQDNVDVEVLLNAGLSADSNIAINAGVDGVGLYRTEIAFLLQHRFPSEDEQY HHHCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHH QQYRAILSSYPQQRVVMRTLDIGGDKPLPYLPIEEDNPFLGWRGIRFTLDHPDIFLIQLR HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCHHHHHH AMLRASAEHGNLSILLPMISGVGELDDAIRLIQQAYHEVVLLDERVVMPQIGVMIEVPSM HHHHHCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHEEEECCEECCCCCCEEEECCHH VYLIPSIAQRVDFVSVGTNDLTQYLLAVDRNNARVSDVYESLHPAVLQALQQIYQQCGQY HHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC HLPVCICGELAGDPFGALLLLGLGYRSLSMNTSNVARIKYLIRHSQLSDLQALSQQALSL CCCEEEECCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SYGKDIHQLMRDYFINHDFAGFIRAGKK HCCHHHHHHHHHHHCCCCHHHHHHCCCC >Mature Secondary Structure MLSQLREIVEKVSRVEDVHQALNTLVRETCTALSTECCTIYLANEERQRLELMATQGLTF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCEE HGDSIHIQFEEGLVGLVKRSAEPLNLAEASKHPAFKYFPQLGEETYHSFLGAPIIHRKKV ECCEEEEEECCCHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH LGVLVIQQKTPRLFSEMEESFLVTLSAQLAVIIAHAQSLGHWSLASKPAAVQGIAASSGV HEEEEECCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCC AIGEFWYDNSQPILSEVCPASTLDKEREQEWLAVAIEAALADFRRMRKKFDSEINKDALA EEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH IFDLFTHLLNDPMLRTDLKKHVERGDRADWALRQVVESYSSRFARMSDVYLRERAHDIRE HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGQRLLFFLHNSEQEQPRIERPVILVANELTASLLASVPKKYLLAVVALEGAANSHAAIL HHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH SRALGVPAVMGANLNLEEVHGKQGIVDGYSGEIYIQPNRQILREYRSLVTEESELFAMVN HHHHCCCEEECCCCCHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHHH KELALPAKTQDNVDVEVLLNAGLSADSNIAINAGVDGVGLYRTEIAFLLQHRFPSEDEQY HHHCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHH QQYRAILSSYPQQRVVMRTLDIGGDKPLPYLPIEEDNPFLGWRGIRFTLDHPDIFLIQLR HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCHHHHHH AMLRASAEHGNLSILLPMISGVGELDDAIRLIQQAYHEVVLLDERVVMPQIGVMIEVPSM HHHHHCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHEEEECCEECCCCCCEEEECCHH VYLIPSIAQRVDFVSVGTNDLTQYLLAVDRNNARVSDVYESLHPAVLQALQQIYQQCGQY HHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC HLPVCICGELAGDPFGALLLLGLGYRSLSMNTSNVARIKYLIRHSQLSDLQALSQQALSL CCCEEEECCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SYGKDIHQLMRDYFINHDFAGFIRAGKK HCCHHHHHHHHHHHCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 7896715; 8973315 [H]