| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is hldE [H]
Identifier: 37678766
GI number: 37678766
Start: 565046
End: 566515
Strand: Direct
Name: hldE [H]
Synonym: VV0582
Alternate gene names: 37678766
Gene position: 565046-566515 (Clockwise)
Preceding gene: 37678765
Following gene: 37678768
Centisome position: 16.84
GC content: 50.48
Gene sequence:
>1470_bases GTGTTACACTCAGCACAGCAAAAAAATTGGAGACCGAGAATGAAACCAATCCTACCTGATTACAACAATGCAGGTGTACT GATCATTGGCGATGTGATGCTAGACCGTTACTGGTATGGCCCAACAAGTCGTATTTCACCAGAAGCCCCTGTACCTGTTG TAAAAGTAGAGAACAATGAAGAGCGCCCAGGCGGAGCGGCAAACGTCGCAATGAACATTGCCTCGCTTGGTGGTCATGCG CGCATTGTGGGTTTAACCGGGATGGATGAGCCAGCGAAAGTGCTGACCGAAACCCTGAATTCGTTAAAAGTAAAATGCGA TTTTGTTGCGCTTCCTGAATACCCAACCATCACCAAACTGCGTGTGATGAGCCGTGGTCAGCAATTGATTCGCTTAGATT TTGAAGACAAGTTTGAAGGCACCAATCCTGAGCTGGTCCTAACACGCATGGAGCGCGCTCTGCCTCACGTGCAGGCGGTG ATTCTGTCTGATTATGCAAAAGGGGCGTTAGAGCACGTTGAAGCTTTGATCGCGAAAGCCCGTGCGGCCAATGTTCCCGT GTTTATCGATCCGAAAGGCACCAACTTTGAACCTTATCGTGGCGCTACTCTGCTAACGCCAAACATGTCTGAGTTTGAGG CGGTGGTCGGCAAAGTGACATCCGACGATGACTTGGTGGAAAAAGCATTAGGCTTGATTGAAAAGTTTGAACTTGGAGCG CTGCTGGTGACGCGCAGTGAGCATGGCATGACATTGGTTCGTCCAGATCAGAAGCCATTCCACTTGCCAACTCAAGCCAA AGAAGTGTACGACGTGACAGGTGCAGGCGATACGGTGATTTCTGTCTTAGCGGCCTCAGTTGCAGCAGGTAAACCGCTTG ATGAAGCATGTGCATTGGCTAATGCGGCGGCGGGTGTCGTAGTCGGTAAGCTAGGTACTTCAACGTTATCGACCATCGAA TTAGCAGAAGCCATTCATGGCAGCCGTGATACCGATTTCGGTGTGATTGCCGAAGCGGCACTGATTGATGCGGTGAAAGC GGCGCAAGCTAAAGGCGAGAAAGTGGTCATGACTAATGGCTGCTTCGACATCCTTCATGCAGGCCATGTTTCTTACCTAA ATAACGCAGCAAAATTGGGTGACCGCCTGATTGTTGCCGTGAATACCGATGAGTCGGTGAAACGCCTGAAAGGTCCTGGC CGTCCTGTGAATCCAACCGATCGTCGTATGGCCGTGCTCGCCGGGCTCGGTGCTGTTGATTGGGTGGTGCCGTTTAGTGA AGACACGCCACAACGTTTGATTTCAGAAGTGCTACCGGATCTGTTGGTTAAAGGCGGCGATTACAAGCCAGAAGATATCG CTGGTGGCAAAGAAGTGATTGCTGCGGGCGGTGAAGTTAAAGTACTGAACTTTGAAGATGGCTGTTCAACCACAGAGATC ATTGATGCAATCAAAGGCGGACGCGGTTAA
Upstream 100 bases:
>100_bases CCGATGTCGCTCTCGATAAGTTTGTTGCGTTGCGCCAAGGGGTCAGCAAAGCTTGGCAAGAGTGGCTTGAATCCTCAACT ATTTAGACCCGATAAAGGCT
Downstream 100 bases:
>100_bases CCACATCGCTTTTCAATGAGCGGTACACATCATCAATATGAGACAAAAAAGGGTGACATTGCTGTCACCCTTTTCTTTAT GCGTGTGTCTCTTTATGCGT
Product: bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
Products: NA
Alternate protein names: D-beta-D-heptose 7-phosphate kinase; D-beta-D-heptose 7-phosphotransferase; D-beta-D-heptose 1-phosphate adenosyltransferase [H]
Number of amino acids: Translated: 489; Mature: 489
Protein sequence:
>489_residues MLHSAQQKNWRPRMKPILPDYNNAGVLIIGDVMLDRYWYGPTSRISPEAPVPVVKVENNEERPGGAANVAMNIASLGGHA RIVGLTGMDEPAKVLTETLNSLKVKCDFVALPEYPTITKLRVMSRGQQLIRLDFEDKFEGTNPELVLTRMERALPHVQAV ILSDYAKGALEHVEALIAKARAANVPVFIDPKGTNFEPYRGATLLTPNMSEFEAVVGKVTSDDDLVEKALGLIEKFELGA LLVTRSEHGMTLVRPDQKPFHLPTQAKEVYDVTGAGDTVISVLAASVAAGKPLDEACALANAAAGVVVGKLGTSTLSTIE LAEAIHGSRDTDFGVIAEAALIDAVKAAQAKGEKVVMTNGCFDILHAGHVSYLNNAAKLGDRLIVAVNTDESVKRLKGPG RPVNPTDRRMAVLAGLGAVDWVVPFSEDTPQRLISEVLPDLLVKGGDYKPEDIAGGKEVIAAGGEVKVLNFEDGCSTTEI IDAIKGGRG
Sequences:
>Translated_489_residues MLHSAQQKNWRPRMKPILPDYNNAGVLIIGDVMLDRYWYGPTSRISPEAPVPVVKVENNEERPGGAANVAMNIASLGGHA RIVGLTGMDEPAKVLTETLNSLKVKCDFVALPEYPTITKLRVMSRGQQLIRLDFEDKFEGTNPELVLTRMERALPHVQAV ILSDYAKGALEHVEALIAKARAANVPVFIDPKGTNFEPYRGATLLTPNMSEFEAVVGKVTSDDDLVEKALGLIEKFELGA LLVTRSEHGMTLVRPDQKPFHLPTQAKEVYDVTGAGDTVISVLAASVAAGKPLDEACALANAAAGVVVGKLGTSTLSTIE LAEAIHGSRDTDFGVIAEAALIDAVKAAQAKGEKVVMTNGCFDILHAGHVSYLNNAAKLGDRLIVAVNTDESVKRLKGPG RPVNPTDRRMAVLAGLGAVDWVVPFSEDTPQRLISEVLPDLLVKGGDYKPEDIAGGKEVIAAGGEVKVLNFEDGCSTTEI IDAIKGGRG >Mature_489_residues MLHSAQQKNWRPRMKPILPDYNNAGVLIIGDVMLDRYWYGPTSRISPEAPVPVVKVENNEERPGGAANVAMNIASLGGHA RIVGLTGMDEPAKVLTETLNSLKVKCDFVALPEYPTITKLRVMSRGQQLIRLDFEDKFEGTNPELVLTRMERALPHVQAV ILSDYAKGALEHVEALIAKARAANVPVFIDPKGTNFEPYRGATLLTPNMSEFEAVVGKVTSDDDLVEKALGLIEKFELGA LLVTRSEHGMTLVRPDQKPFHLPTQAKEVYDVTGAGDTVISVLAASVAAGKPLDEACALANAAAGVVVGKLGTSTLSTIE LAEAIHGSRDTDFGVIAEAALIDAVKAAQAKGEKVVMTNGCFDILHAGHVSYLNNAAKLGDRLIVAVNTDESVKRLKGPG RPVNPTDRRMAVLAGLGAVDWVVPFSEDTPQRLISEVLPDLLVKGGDYKPEDIAGGKEVIAAGGEVKVLNFEDGCSTTEI IDAIKGGRG
Specific function: Catalyzes the ADP transfer to D-glycero-D-manno-heptose 1-phosphate, yielding ADP-D,D-heptose [H]
COG id: COG2870
COG function: function code M; ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the cytidylyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1789432, Length=472, Percent_Identity=69.2796610169492, Blast_Score=667, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023030 - InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR004821 - InterPro: IPR004820 - InterPro: IPR011913 - InterPro: IPR011914 - InterPro: IPR014729 [H]
Pfam domain/function: PF01467 CTP_transf_2; PF00294 PfkB [H]
EC number: 2.7.-.-
Molecular weight: Translated: 52203; Mature: 52203
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: PS00583 PFKB_KINASES_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHSAQQKNWRPRMKPILPDYNNAGVLIIGDVMLDRYWYGPTSRISPEAPVPVVKVENNE CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHEECCCCCCCCCCCCCCEEEECCCC ERPGGAANVAMNIASLGGHARIVGLTGMDEPAKVLTETLNSLKVKCDFVALPEYPTITKL CCCCCHHHHEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHHEEEEEEEECCCCCCHHHH RVMSRGQQLIRLDFEDKFEGTNPELVLTRMERALPHVQAVILSDYAKGALEHVEALIAKA HHHHCCCEEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RAANVPVFIDPKGTNFEPYRGATLLTPNMSEFEAVVGKVTSDDDLVEKALGLIEKFELGA HHCCCCEEECCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCE LLVTRSEHGMTLVRPDQKPFHLPTQAKEVYDVTGAGDTVISVLAASVAAGKPLDEACALA EEEEECCCCEEEECCCCCCCCCCCCHHHHEEECCCCHHHHHHHHHHHHCCCCHHHHHHHH NAAAGVVVGKLGTSTLSTIELAEAIHGSRDTDFGVIAEAALIDAVKAAQAKGEKVVMTNG HHHCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC CFDILHAGHVSYLNNAAKLGDRLIVAVNTDESVKRLKGPGRPVNPTDRRMAVLAGLGAVD HHHHHHCCHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHCCCHHH WVVPFSEDTPQRLISEVLPDLLVKGGDYKPEDIAGGKEVIAAGGEVKVLNFEDGCSTTEI EEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCHHEEECCCEEEEEEECCCCCHHHH IDAIKGGRG HHHHCCCCC >Mature Secondary Structure MLHSAQQKNWRPRMKPILPDYNNAGVLIIGDVMLDRYWYGPTSRISPEAPVPVVKVENNE CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHEECCCCCCCCCCCCCCEEEECCCC ERPGGAANVAMNIASLGGHARIVGLTGMDEPAKVLTETLNSLKVKCDFVALPEYPTITKL CCCCCHHHHEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHHEEEEEEEECCCCCCHHHH RVMSRGQQLIRLDFEDKFEGTNPELVLTRMERALPHVQAVILSDYAKGALEHVEALIAKA HHHHCCCEEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RAANVPVFIDPKGTNFEPYRGATLLTPNMSEFEAVVGKVTSDDDLVEKALGLIEKFELGA HHCCCCEEECCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCE LLVTRSEHGMTLVRPDQKPFHLPTQAKEVYDVTGAGDTVISVLAASVAAGKPLDEACALA EEEEECCCCEEEECCCCCCCCCCCCHHHHEEECCCCHHHHHHHHHHHHCCCCHHHHHHHH NAAAGVVVGKLGTSTLSTIELAEAIHGSRDTDFGVIAEAALIDAVKAAQAKGEKVVMTNG HHHCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC CFDILHAGHVSYLNNAAKLGDRLIVAVNTDESVKRLKGPGRPVNPTDRRMAVLAGLGAVD HHHHHHCCHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHCCCHHH WVVPFSEDTPQRLISEVLPDLLVKGGDYKPEDIAGGKEVIAAGGEVKVLNFEDGCSTTEI EEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCHHEEECCCEEEEEEECCCCCHHHH IDAIKGGRG HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA