| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is yejA [C]
Identifier: 37678437
GI number: 37678437
Start: 264329
End: 266161
Strand: Direct
Name: yejA [C]
Synonym: VV0253
Alternate gene names: 37678437
Gene position: 264329-266161 (Clockwise)
Preceding gene: 37678436
Following gene: 37678438
Centisome position: 7.88
GC content: 47.3
Gene sequence:
>1833_bases ATGATGAAAAAAACCTTACTAACCACAGCGTTATCGCTGATGAGTGCCGGTGTTTACGCCACCACTTTACCCGCGGATGT GAACTGGCAGACCAACTGGGATGAGCCGTTGTTTGCTTCTTCAGATGCCAAATTTGGTGGGACATTCCGTACTTTCATTC AAAGCTTTCCACAAACTTTACGCAGTGTTGGACCTGATTCTAACTCAGGATTGCGTTCTTTTTTCCTTGATGAGACGCCT GCGCTGGTAGATCAGCATCCAGACACGTTGGAGTGGATCCCAGCCTTAGCCAATGAATGGGCCTTTGCAGGGGATAACCG TACGGTTTACTTCAAATTAAATCCCAATGCCAAATGGTCGGACGGCAAACCTGTGACGGCCGATGATTTCGTTTTTATGC TCAAGTTCTACCGCTCAAAAGATTTGGTGGCACCTTGGTATAACGAGTACTACACCAATGTGATTGACGATGTGCAGAAA ATTGATCAGCACACCTTCGCGGCGGTGAGCAAAGTTGAAAAAAACCAAGAAGATCTTCTCTATACCTTAGGTGCGCTTCG TCCGCGACCTGCACACTTTTATGCCAAGCCAGCAAAAGATGAAAATGGCGATGGTATTGACGATAACTTCGTACGCAAAT ACAACTTCAAAGCTGAGCCAACCACCAACGCTTACTACCTTGATGACATTAAGAAGGGCAAAAGCGTCACCTTCAAACAC GTTGGTCAAGATTGGTGGGGTTACAGCAACAAGTATTATCAACACCGTTACAATGTGGAGAAAATCCGTATCACGGTGAT CCGCGACAACGACATCGCGATGAAGCATTTCGAAAAAGGCGATTTGGATACTTTTGGCCTGATCCTGCCGGATTTGTGGC ACGACAAATCCAACACAGAACCGTACCAAAAAGGCTACATCGAGAAGTTCTGGGGTTACAACCAAACGCCACAAGGCGCG GGTGGTCTATGGATGAACGTTGCCACGCCTCTGCTGGACGATCTCAATGTGCGCAAAGGGATCATGCATGCTACCGATTA CGATGGCATGATCGATAAGATCACCCGTGGTGACTACTCACGCAAACCGCATGCGCTCGGTTCTGGCCACGGTAAATACG ACTTGCCTAACCCTGTGCCGCCTAAGTTTGATCCGGAATTAGCGATTCGCTACTTTGAAGCGGCGGGCTTTAACCAAATT GGTGCCGATGGGGTGCGGGTCAACGATAAAGGCCAGCGTCTCAGTTTCGCTATCACGTATGGTTATGCTCACCACACGCC ACGTATCGCGTATTTGAAAGAGCAAGCGAAGAAAGCGGGATTGGAGTTTGAACTAAAACTGGTGGATGGTTCCTCGGCGT TTAAGTTCATCCTCGAGAAAAAGCATGAATTGGCCTTCTTAGATATGGGTACTTCCGATGTGCCAGCTTACTGGGAGTAC TTCCATTCAGCTAACGCCAATCGCCCACAAACCAACAACCACACCAATTTCAGCACGCCTGAACTGGATACATTGATCAT GGCGTACAAAAACGAATTTGATTTGGAGAAGAAGTACAACTATTCCCATCAAATCCAGCAAATTGTTAGTGATGCGAACC TGATTGTTCCAGGCTATATGGTGCCGTATACCCGTGTGGGTTACTGGCGCTGGTTAAAGTACCCACAAAAGGCGATGACC AAAAAATCGGAAGTTTTATTTACCAGTGGTGGCGCGATCGGTTTAGGGACATTCTGGATCGATAGAGACGCTAAGAAAGA AACCGAAAAAGCCATCAAAGCAGGGAAAGCCTTTGCCCCTGTGACGGTGATTGATGACACCTATAAACTATAA
Upstream 100 bases:
>100_bases CCTTTATTGGTGAAGCCATTCGTGCAGCTTTTGATCCGAAAAAATTCACCCGTTACGTTTAAATGGTCAATACTGTTGGA ACGGATAATATAGGGACATA
Downstream 100 bases:
>100_bases GTTGGCCACAAGAGGGAAGCACGATGCAGGATGATGTGATTCTGAGTGTTAGAGATCTCGAGGTCTCTTTCACTACCGAT GATGGCCCAGTCAAGGTATT
Product: ABC-type oligopeptide transport system, periplasmic component
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 610; Mature: 610
Protein sequence:
>610_residues MMKKTLLTTALSLMSAGVYATTLPADVNWQTNWDEPLFASSDAKFGGTFRTFIQSFPQTLRSVGPDSNSGLRSFFLDETP ALVDQHPDTLEWIPALANEWAFAGDNRTVYFKLNPNAKWSDGKPVTADDFVFMLKFYRSKDLVAPWYNEYYTNVIDDVQK IDQHTFAAVSKVEKNQEDLLYTLGALRPRPAHFYAKPAKDENGDGIDDNFVRKYNFKAEPTTNAYYLDDIKKGKSVTFKH VGQDWWGYSNKYYQHRYNVEKIRITVIRDNDIAMKHFEKGDLDTFGLILPDLWHDKSNTEPYQKGYIEKFWGYNQTPQGA GGLWMNVATPLLDDLNVRKGIMHATDYDGMIDKITRGDYSRKPHALGSGHGKYDLPNPVPPKFDPELAIRYFEAAGFNQI GADGVRVNDKGQRLSFAITYGYAHHTPRIAYLKEQAKKAGLEFELKLVDGSSAFKFILEKKHELAFLDMGTSDVPAYWEY FHSANANRPQTNNHTNFSTPELDTLIMAYKNEFDLEKKYNYSHQIQQIVSDANLIVPGYMVPYTRVGYWRWLKYPQKAMT KKSEVLFTSGGAIGLGTFWIDRDAKKETEKAIKAGKAFAPVTVIDDTYKL
Sequences:
>Translated_610_residues MMKKTLLTTALSLMSAGVYATTLPADVNWQTNWDEPLFASSDAKFGGTFRTFIQSFPQTLRSVGPDSNSGLRSFFLDETP ALVDQHPDTLEWIPALANEWAFAGDNRTVYFKLNPNAKWSDGKPVTADDFVFMLKFYRSKDLVAPWYNEYYTNVIDDVQK IDQHTFAAVSKVEKNQEDLLYTLGALRPRPAHFYAKPAKDENGDGIDDNFVRKYNFKAEPTTNAYYLDDIKKGKSVTFKH VGQDWWGYSNKYYQHRYNVEKIRITVIRDNDIAMKHFEKGDLDTFGLILPDLWHDKSNTEPYQKGYIEKFWGYNQTPQGA GGLWMNVATPLLDDLNVRKGIMHATDYDGMIDKITRGDYSRKPHALGSGHGKYDLPNPVPPKFDPELAIRYFEAAGFNQI GADGVRVNDKGQRLSFAITYGYAHHTPRIAYLKEQAKKAGLEFELKLVDGSSAFKFILEKKHELAFLDMGTSDVPAYWEY FHSANANRPQTNNHTNFSTPELDTLIMAYKNEFDLEKKYNYSHQIQQIVSDANLIVPGYMVPYTRVGYWRWLKYPQKAMT KKSEVLFTSGGAIGLGTFWIDRDAKKETEKAIKAGKAFAPVTVIDDTYKL >Mature_610_residues MMKKTLLTTALSLMSAGVYATTLPADVNWQTNWDEPLFASSDAKFGGTFRTFIQSFPQTLRSVGPDSNSGLRSFFLDETP ALVDQHPDTLEWIPALANEWAFAGDNRTVYFKLNPNAKWSDGKPVTADDFVFMLKFYRSKDLVAPWYNEYYTNVIDDVQK IDQHTFAAVSKVEKNQEDLLYTLGALRPRPAHFYAKPAKDENGDGIDDNFVRKYNFKAEPTTNAYYLDDIKKGKSVTFKH VGQDWWGYSNKYYQHRYNVEKIRITVIRDNDIAMKHFEKGDLDTFGLILPDLWHDKSNTEPYQKGYIEKFWGYNQTPQGA GGLWMNVATPLLDDLNVRKGIMHATDYDGMIDKITRGDYSRKPHALGSGHGKYDLPNPVPPKFDPELAIRYFEAAGFNQI GADGVRVNDKGQRLSFAITYGYAHHTPRIAYLKEQAKKAGLEFELKLVDGSSAFKFILEKKHELAFLDMGTSDVPAYWEY FHSANANRPQTNNHTNFSTPELDTLIMAYKNEFDLEKKYNYSHQIQQIVSDANLIVPGYMVPYTRVGYWRWLKYPQKAMT KKSEVLFTSGGAIGLGTFWIDRDAKKETEKAIKAGKAFAPVTVIDDTYKL
Specific function: Probably part of a binding-protein-dependent transport system [H]
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 69692; Mature: 69692
Theoretical pI: Translated: 7.32; Mature: 7.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKKTLLTTALSLMSAGVYATTLPADVNWQTNWDEPLFASSDAKFGGTFRTFIQSFPQTL CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH RSVGPDSNSGLRSFFLDETPALVDQHPDTLEWIPALANEWAFAGDNRTVYFKLNPNAKWS HHCCCCCCCCHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCEEECCCEEEEEEECCCCCCC DGKPVTADDFVFMLKFYRSKDLVAPWYNEYYTNVIDDVQKIDQHTFAAVSKVEKNQEDLL CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH YTLGALRPRPAHFYAKPAKDENGDGIDDNFVRKYNFKAEPTTNAYYLDDIKKGKSVTFKH HHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCEEHHH VGQDWWGYSNKYYQHRYNVEKIRITVIRDNDIAMKHFEKGDLDTFGLILPDLWHDKSNTE CCCHHCCCCCCHHHEECCEEEEEEEEEECCCCEEHHCCCCCCCHHHHHHHHHHCCCCCCC PYQKGYIEKFWGYNQTPQGAGGLWMNVATPLLDDLNVRKGIMHATDYDGMIDKITRGDYS HHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC RKPHALGSGHGKYDLPNPVPPKFDPELAIRYFEAAGFNQIGADGVRVNDKGQRLSFAITY CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEEEEE GYAHHTPRIAYLKEQAKKAGLEFELKLVDGSSAFKFILEKKHELAFLDMGTSDVPAYWEY CCCCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHH FHSANANRPQTNNHTNFSTPELDTLIMAYKNEFDLEKKYNYSHQIQQIVSDANLIVPGYM HHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCEEECCCC VPYTRVGYWRWLKYPQKAMTKKSEVLFTSGGAIGLGTFWIDRDAKKETEKAIKAGKAFAP CCCHHHHHHHHHCCCHHHHCCCCCEEEECCCCEEEEEEEECCCHHHHHHHHHHCCCCCCC VTVIDDTYKL EEEECCCCCC >Mature Secondary Structure MMKKTLLTTALSLMSAGVYATTLPADVNWQTNWDEPLFASSDAKFGGTFRTFIQSFPQTL CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH RSVGPDSNSGLRSFFLDETPALVDQHPDTLEWIPALANEWAFAGDNRTVYFKLNPNAKWS HHCCCCCCCCHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCEEECCCEEEEEEECCCCCCC DGKPVTADDFVFMLKFYRSKDLVAPWYNEYYTNVIDDVQKIDQHTFAAVSKVEKNQEDLL CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH YTLGALRPRPAHFYAKPAKDENGDGIDDNFVRKYNFKAEPTTNAYYLDDIKKGKSVTFKH HHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCEEHHH VGQDWWGYSNKYYQHRYNVEKIRITVIRDNDIAMKHFEKGDLDTFGLILPDLWHDKSNTE CCCHHCCCCCCHHHEECCEEEEEEEEEECCCCEEHHCCCCCCCHHHHHHHHHHCCCCCCC PYQKGYIEKFWGYNQTPQGAGGLWMNVATPLLDDLNVRKGIMHATDYDGMIDKITRGDYS HHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC RKPHALGSGHGKYDLPNPVPPKFDPELAIRYFEAAGFNQIGADGVRVNDKGQRLSFAITY CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEEEEE GYAHHTPRIAYLKEQAKKAGLEFELKLVDGSSAFKFILEKKHELAFLDMGTSDVPAYWEY CCCCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHH FHSANANRPQTNNHTNFSTPELDTLIMAYKNEFDLEKKYNYSHQIQQIVSDANLIVPGYM HHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCEEECCCC VPYTRVGYWRWLKYPQKAMTKKSEVLFTSGGAIGLGTFWIDRDAKKETEKAIKAGKAFAP CCCHHHHHHHHHCCCHHHHCCCCCEEEECCCCEEEEEEEECCCHHHHHHHHHHCCCCCCC VTVIDDTYKL EEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10567266 [H]