| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37678357
Identifier: 37678357
GI number: 37678357
Start: 184257
End: 184790
Strand: Direct
Name: 37678357
Synonym: VV0173
Alternate gene names: NA
Gene position: 184257-184790 (Clockwise)
Preceding gene: 37678356
Following gene: 37678358
Centisome position: 5.49
GC content: 46.07
Gene sequence:
>534_bases ATGGGGCTTGATAACGTCGATGTCTGGTTTCAAGATGAAGCAAGATTTGGCCAGCAAAACACGACAACTCGACTTTGGGC TGAGCGTGGCTCAAGACCAAGAGTGGTAAAACAGCAGCAGTTTGAATATGCGTATTTGTTTGGCTCAGTATGCCCCGCTA GAGGTATTGGTGAGGCAATGGTCGTTCCTTGGGTTAACAAGAACATTATGGTTGAGCATCTGAAGCAACTCTCCGCGGTG ACCGAAAAAGGTCGTCACGCAGTGGTCATTATGGATGGCGCGGGTTGGCATACAAATGACATTGCTGAGCCATTTGATAA TGTCAGTATCATCAAGCTCCCACCCTATTCACCAGAGCTAAACCCGATAGAACAAGTGTGGAGTTGGTTAAGACAACACT ATCTCGCCAATCAATCTTTTGCGGATTACGAAGACATTGTCTCCAAAGTATGTAGGGCTTGGAATAGTTTTTTGGAATGT TCGGCCAGAGTCAGACAGATGTGCTCGAGAAGTTGGATAGACCTGAACAGTTAA
Upstream 100 bases:
>100_bases TGGATAACTTCACGCTCCAAGTACCCTCGTCAATCCTAGCAAATCCAAGACGATTTTAAAAAAATTCAAAATTGAAACGA TCCTTAAGATCCCCGGTCAC
Downstream 100 bases:
>100_bases TTTTCCAGATTGGTATTAGCCAATTTTCTGGGCTCTTCCACTCTAGTTGATTTAAAACCCCTAACTGGCTTTAAATCAAT ACCAAAAACTAAATAGAGAA
Product: transposase and inactivated derivative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MGLDNVDVWFQDEARFGQQNTTTRLWAERGSRPRVVKQQQFEYAYLFGSVCPARGIGEAMVVPWVNKNIMVEHLKQLSAV TEKGRHAVVIMDGAGWHTNDIAEPFDNVSIIKLPPYSPELNPIEQVWSWLRQHYLANQSFADYEDIVSKVCRAWNSFLEC SARVRQMCSRSWIDLNS
Sequences:
>Translated_177_residues MGLDNVDVWFQDEARFGQQNTTTRLWAERGSRPRVVKQQQFEYAYLFGSVCPARGIGEAMVVPWVNKNIMVEHLKQLSAV TEKGRHAVVIMDGAGWHTNDIAEPFDNVSIIKLPPYSPELNPIEQVWSWLRQHYLANQSFADYEDIVSKVCRAWNSFLEC SARVRQMCSRSWIDLNS >Mature_176_residues GLDNVDVWFQDEARFGQQNTTTRLWAERGSRPRVVKQQQFEYAYLFGSVCPARGIGEAMVVPWVNKNIMVEHLKQLSAVT EKGRHAVVIMDGAGWHTNDIAEPFDNVSIIKLPPYSPELNPIEQVWSWLRQHYLANQSFADYEDIVSKVCRAWNSFLECS ARVRQMCSRSWIDLNS
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20421; Mature: 20290
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLDNVDVWFQDEARFGQQNTTTRLWAERGSRPRVVKQQQFEYAYLFGSVCPARGIGEAM CCCCCCEEEECCHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE VVPWVNKNIMVEHLKQLSAVTEKGRHAVVIMDGAGWHTNDIAEPFDNVSIIKLPPYSPEL EECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCC NPIEQVWSWLRQHYLANQSFADYEDIVSKVCRAWNSFLECSARVRQMCSRSWIDLNS CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure GLDNVDVWFQDEARFGQQNTTTRLWAERGSRPRVVKQQQFEYAYLFGSVCPARGIGEAM CCCCCEEEECCHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE VVPWVNKNIMVEHLKQLSAVTEKGRHAVVIMDGAGWHTNDIAEPFDNVSIIKLPPYSPEL EECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCC NPIEQVWSWLRQHYLANQSFADYEDIVSKVCRAWNSFLECSARVRQMCSRSWIDLNS CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]