| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
Click here to switch to the map view.
The map label for this gene is 37678343
Identifier: 37678343
GI number: 37678343
Start: 164990
End: 166798
Strand: Direct
Name: 37678343
Synonym: VV0159
Alternate gene names: NA
Gene position: 164990-166798 (Clockwise)
Preceding gene: 37678342
Following gene: 37678346
Centisome position: 4.92
GC content: 32.67
Gene sequence:
>1809_bases ATGCCCATAAAAAAAAGATATGTTTTCTTGATTTTTATTAGCTTAATCATAAACGGCTGCAATTCAGAAGATAATTCATT GAATAATGTTAAAGAAAATGAAATAAGATCTATTCAAATAACTTTTTCACCAAAAACTAAAGGCATTAGTTCGTATTCAA TAGCAAAAGGAAATTGCATTAAATTCATAGCTACTGCTATTTATTTAGACAATTCAAGTGTTGATGTAACAAAAGATGTA ATTTGGAAAAGTGAAGCGTCAAATGTTTTAGCTATTGATAGTAAAGGTGAAGCAAAAGGAAAAGATATAGGGTCATCAAA AATACAAGCATCAATAGGAAATGTTCATAGTAACGCTGTAAACATAGAAGTTACTGATGCAATTATCACTTCAATTCAAA TAACTCCAAGTGCAGCCTCATTAGCTAAAGGGCAAACACAACCTTTAACTGCAACCGCGATATTTAGCGATGATACATCC TTTCCTGTAACAGAATCCGTAACTTGGAAATCAGAAGATACTAATATAGCAACAGTTACAAATAAAGGAGTTTTAAATGC GATTAACTCTGGAATCGTTGAAATTTTTGCTAACAAAGATGGTGTAACCAGTAACGCTGTAAACATAGAAGTTACTGATG CAATCATCACTTCAATTCAAATAACTCCAAGTGCAGCCTCATTAGCTAAAGGGCAAACACAACCTTTAACTGCAACCGCG ATATTTAGCGATGATACATCCTTTCCTGTAACAGAGTCCGTAACTTGGAAATCAGAAGATACTAATATAGCAACAGTTAC AAATAAAGGAGTTTTAAATGCGATTAACTCTGGAATCGTTGAAATTTTTGCTAACAAAGATGGTGTAGCCAGTAACGCTG TAAACATAGAAGTTACTGATGCAATCATCACTTCAATTCAAATAACTCCAAGTGCAGCCTCATTAGCTAAAGGGCAAACA CAAACTTTAACTGCAACCGCGATATTTAGCGATGATACATCCTTTCCTGTAACAGAGTCCGTAACTTGGAAATCAGAAGA TACTAATATAGCAACAGTTACAAATAAAGGAGTTTTAAATGCGATTAACTCTGGAATCGTTGAAATTTTTGCTAACAAAG ATGGTGTAACCAGTAACGCTGTAAACATAGAAGTTACTGATTTTTTGAGTAAGCACTTCTCAATTGATGTTTACGACACC AATAATAACACTTTCTCTTCAAGAGAGATTACTCAAAGTAATAACAATAAATTTAATGGTAATGGATTTAGCATTGCTCT TTTAGGCAATGAGTTTAAAGTAATCCCTATAAGTGACCAAAGAATAATAAGCGAACGCTCACAATCAATTTATGATGAGG ATAATAGTATCATCGGTTTTATTGCAGAAGTCGCCGTATCTTCAGAAATTGACGATCCAAGTATAGATTATACTTATATT TCAATCTATGAAAACAGAACCTCCCAAAATAAATTAAATGGAATTTATTCAGGAAAATATTATTTCCGCCGGACTCCTGG AGCAAGAGCTAGCATTATTGACATTAGCTTTGATCTAAACAATGAAACATGTTTTGTTGATTATGGCGGTTTTCCATTTT TAAAATGCAGTGATGTATACATAACTAATGGTCAGTTAACTGCGGTGCTTGAATCTATCGATAACGGGTCTAAATTATTT TACGGTAAAATTCAAGCTAATATTTATGGTAAAAATAACAACAATATAAGTGGCTTTGTGATTGATAAAAATGTTGGGAA TGGTGGAGTTTACAGCTCTGACATTTTAATTTTAAATAAAAATCGGTAA
Upstream 100 bases:
>100_bases GTGGTTTATTCCTGAATTAGCTTCTATATGTCAAGAGAATCGAAGTTATATAGAGGTTTATTATAATGACAGTAACAATT ACCAATCAAGGTTTAATTAA
Downstream 100 bases:
>100_bases CCCGTGATCATTGAAGTTTATTTATCTATAATCAGGATTATGTTATGCACCATGAAAATGTTACCCATATTTGAAAGTGT CAGCCACAAAGCCTGGTTAG
Product: surface protein
Products: NA
Alternate protein names: Surface Protein; Ig Domain Domain Protein; Ig Domain Protein Group 2 Domain Protein; Ig-Like Domain-Containing Protein; Ig-Like Repeat-Containing Protein; Protein With A Bacterial Immunoglobulin-Like Domain; Surface/Cell-Adhesion Protein; Peptidase S8 And; Cell Adhesion Protein; YVTN Beta-Propeller Repeat-Containing Protein; 1 2-A-L-Fucosidase; LigB Lipoprotein; LigB-Like Protein; Bacterial Ig-Like Domain; CHU Large Protein; Extracellular Serine Protease; Ligc Protein
Number of amino acids: Translated: 602; Mature: 601
Protein sequence:
>602_residues MPIKKRYVFLIFISLIINGCNSEDNSLNNVKENEIRSIQITFSPKTKGISSYSIAKGNCIKFIATAIYLDNSSVDVTKDV IWKSEASNVLAIDSKGEAKGKDIGSSKIQASIGNVHSNAVNIEVTDAIITSIQITPSAASLAKGQTQPLTATAIFSDDTS FPVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVTSNAVNIEVTDAIITSIQITPSAASLAKGQTQPLTATA IFSDDTSFPVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVASNAVNIEVTDAIITSIQITPSAASLAKGQT QTLTATAIFSDDTSFPVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVTSNAVNIEVTDFLSKHFSIDVYDT NNNTFSSREITQSNNNKFNGNGFSIALLGNEFKVIPISDQRIISERSQSIYDEDNSIIGFIAEVAVSSEIDDPSIDYTYI SIYENRTSQNKLNGIYSGKYYFRRTPGARASIIDISFDLNNETCFVDYGGFPFLKCSDVYITNGQLTAVLESIDNGSKLF YGKIQANIYGKNNNNISGFVIDKNVGNGGVYSSDILILNKNR
Sequences:
>Translated_602_residues MPIKKRYVFLIFISLIINGCNSEDNSLNNVKENEIRSIQITFSPKTKGISSYSIAKGNCIKFIATAIYLDNSSVDVTKDV IWKSEASNVLAIDSKGEAKGKDIGSSKIQASIGNVHSNAVNIEVTDAIITSIQITPSAASLAKGQTQPLTATAIFSDDTS FPVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVTSNAVNIEVTDAIITSIQITPSAASLAKGQTQPLTATA IFSDDTSFPVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVASNAVNIEVTDAIITSIQITPSAASLAKGQT QTLTATAIFSDDTSFPVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVTSNAVNIEVTDFLSKHFSIDVYDT NNNTFSSREITQSNNNKFNGNGFSIALLGNEFKVIPISDQRIISERSQSIYDEDNSIIGFIAEVAVSSEIDDPSIDYTYI SIYENRTSQNKLNGIYSGKYYFRRTPGARASIIDISFDLNNETCFVDYGGFPFLKCSDVYITNGQLTAVLESIDNGSKLF YGKIQANIYGKNNNNISGFVIDKNVGNGGVYSSDILILNKNR >Mature_601_residues PIKKRYVFLIFISLIINGCNSEDNSLNNVKENEIRSIQITFSPKTKGISSYSIAKGNCIKFIATAIYLDNSSVDVTKDVI WKSEASNVLAIDSKGEAKGKDIGSSKIQASIGNVHSNAVNIEVTDAIITSIQITPSAASLAKGQTQPLTATAIFSDDTSF PVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVTSNAVNIEVTDAIITSIQITPSAASLAKGQTQPLTATAI FSDDTSFPVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVASNAVNIEVTDAIITSIQITPSAASLAKGQTQ TLTATAIFSDDTSFPVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVTSNAVNIEVTDFLSKHFSIDVYDTN NNTFSSREITQSNNNKFNGNGFSIALLGNEFKVIPISDQRIISERSQSIYDEDNSIIGFIAEVAVSSEIDDPSIDYTYIS IYENRTSQNKLNGIYSGKYYFRRTPGARASIIDISFDLNNETCFVDYGGFPFLKCSDVYITNGQLTAVLESIDNGSKLFY GKIQANIYGKNNNNISGFVIDKNVGNGGVYSSDILILNKNR
Specific function: Unknown
COG id: COG5492
COG function: function code N; Bacterial surface proteins containing Ig-like domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64739; Mature: 64607
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIKKRYVFLIFISLIINGCNSEDNSLNNVKENEIRSIQITFSPKTKGISSYSIAKGNCI CCCCHHHHHEEEHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCHH KFIATAIYLDNSSVDVTKDVIWKSEASNVLAIDSKGEAKGKDIGSSKIQASIGNVHSNAV EEEEEEEEECCCCCCEEHHHEEECCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCEE NIEVTDAIITSIQITPSAASLAKGQTQPLTATAIFSDDTSFPVTESVTWKSEDTNIATVT EEEEEEEEEEEEEECCCHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEE NKGVLNAINSGIVEIFANKDGVTSNAVNIEVTDAIITSIQITPSAASLAKGQTQPLTATA CCCHHHHHCCCEEEEEECCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHCCCCCCEEEEE IFSDDTSFPVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVASNAVNIEVTD EEECCCCCCCCCEEEECCCCCEEEEEECCCHHHHHCCCEEEEEECCCCCCCCEEEEEEEE AIITSIQITPSAASLAKGQTQTLTATAIFSDDTSFPVTESVTWKSEDTNIATVTNKGVLN EEEEEEEECCCHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCHHH AINSGIVEIFANKDGVTSNAVNIEVTDFLSKHFSIDVYDTNNNTFSSREITQSNNNKFNG HHCCCEEEEEECCCCCCCCEEEEEEHHHHHCCEEEEEEECCCCEECCCEEECCCCCEECC NGFSIALLGNEFKVIPISDQRIISERSQSIYDEDNSIIGFIAEVAVSSEIDDPSIDYTYI CCEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCEEEE SIYENRTSQNKLNGIYSGKYYFRRTPGARASIIDISFDLNNETCFVDYGGFPFLKCSDVY EEEECCCCCCCCCEEECCEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCEEEEEEEE ITNGQLTAVLESIDNGSKLFYGKIQANIYGKNNNNISGFVIDKNVGNGGVYSSDILILNK EECCEEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCCCCCEEECEEEEEEC NR CC >Mature Secondary Structure PIKKRYVFLIFISLIINGCNSEDNSLNNVKENEIRSIQITFSPKTKGISSYSIAKGNCI CCCHHHHHEEEHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCHH KFIATAIYLDNSSVDVTKDVIWKSEASNVLAIDSKGEAKGKDIGSSKIQASIGNVHSNAV EEEEEEEEECCCCCCEEHHHEEECCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCEE NIEVTDAIITSIQITPSAASLAKGQTQPLTATAIFSDDTSFPVTESVTWKSEDTNIATVT EEEEEEEEEEEEEECCCHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEE NKGVLNAINSGIVEIFANKDGVTSNAVNIEVTDAIITSIQITPSAASLAKGQTQPLTATA CCCHHHHHCCCEEEEEECCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHCCCCCCEEEEE IFSDDTSFPVTESVTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVASNAVNIEVTD EEECCCCCCCCCEEEECCCCCEEEEEECCCHHHHHCCCEEEEEECCCCCCCCEEEEEEEE AIITSIQITPSAASLAKGQTQTLTATAIFSDDTSFPVTESVTWKSEDTNIATVTNKGVLN EEEEEEEECCCHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCHHH AINSGIVEIFANKDGVTSNAVNIEVTDFLSKHFSIDVYDTNNNTFSSREITQSNNNKFNG HHCCCEEEEEECCCCCCCCEEEEEEHHHHHCCEEEEEEECCCCEECCCEEECCCCCEECC NGFSIALLGNEFKVIPISDQRIISERSQSIYDEDNSIIGFIAEVAVSSEIDDPSIDYTYI CCEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCEEEE SIYENRTSQNKLNGIYSGKYYFRRTPGARASIIDISFDLNNETCFVDYGGFPFLKCSDVY EEEECCCCCCCCCEEECCEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCEEEEEEEE ITNGQLTAVLESIDNGSKLFYGKIQANIYGKNNNNISGFVIDKNVGNGGVYSSDILILNK EECCEEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCCCCCEEECEEEEEEC NR CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA