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The map label for this gene is sodB [H]

Identifier: 37523896

GI number: 37523896

Start: 4562038

End: 4562649

Strand: Direct

Name: sodB [H]

Synonym: gvip563

Alternate gene names: 37523896

Gene position: 4562038-4562649 (Clockwise)

Preceding gene: 37523893

Following gene: 37523897

Centisome position: 97.92

GC content: 60.29

Gene sequence:

>612_bases
ATGGCTCATACACTCCCGCCGCTGCCCTACGACGAGAACGCTCTCGCTCCGTACGTTTCGGCTCAGACTTTGAGCTTCCA
TTACGGCAAGCACCACACCGGCTATCTCAACAACATGAACAAGGCGATCGCCGGCACCGAGCTGGAGTCGCTGTCGCTGG
TGGACCTCATCCGTACCGCCGCCAAAAATGCCGAACAAAAGACGTTGTTCAACAACGCCGCCCAGGTCTGGAACCATACG
TTCTACTGGAACAGCATGCGCCCCGGCGGCGGCGGCGAGCCGGGCGGGACGCTGGGCGAGATGATCAAAGATGCCTTCGG
CAGCTACGACGAATTCAAGAAGCAGTTCGTCACCGCCGGTACCACCCAGTTCGGCAGCGGCTACGCCTGGTTGGTCAAAG
ACGGTGAGAAGCTGGTGGTCACCAAGACCCCCAACGCCGAGACCCCCATCACCGACGAGAGCAAGCTGCCGCTGCTCAAC
ATGGACGTCTGGGAGCACGCCTACTACCTCGACTACCAGAACCTGCGCCCCGACTACGAGAACGCCTTCGCCGACAATCT
GATCAATTGGGAGTTTGCCGAGAAGAACCTGGAGCGCGTCTTCGCGGGTTGA

Upstream 100 bases:

>100_bases
CGGGTCCGGCCAGCCGTGCACAGCACTGACCAAAGCGGAACCGGCGTGTTATTAGATCTTAGGAGGAATGCCGAACCCAT
TGGCAATTAGAGAGGACCCC

Downstream 100 bases:

>100_bases
TCGCCTTGAGCATTTTTCACGCGGCCCGCAACCACCCAATCCTGGGCGGCGGCGGGTCGTTTGCTTTGGATAGGGACGTG
CGATCGGGTAGGCTGTTGCT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAHTLPPLPYDENALAPYVSAQTLSFHYGKHHTGYLNNMNKAIAGTELESLSLVDLIRTAAKNAEQKTLFNNAAQVWNHT
FYWNSMRPGGGGEPGGTLGEMIKDAFGSYDEFKKQFVTAGTTQFGSGYAWLVKDGEKLVVTKTPNAETPITDESKLPLLN
MDVWEHAYYLDYQNLRPDYENAFADNLINWEFAEKNLERVFAG

Sequences:

>Translated_203_residues
MAHTLPPLPYDENALAPYVSAQTLSFHYGKHHTGYLNNMNKAIAGTELESLSLVDLIRTAAKNAEQKTLFNNAAQVWNHT
FYWNSMRPGGGGEPGGTLGEMIKDAFGSYDEFKKQFVTAGTTQFGSGYAWLVKDGEKLVVTKTPNAETPITDESKLPLLN
MDVWEHAYYLDYQNLRPDYENAFADNLINWEFAEKNLERVFAG
>Mature_202_residues
AHTLPPLPYDENALAPYVSAQTLSFHYGKHHTGYLNNMNKAIAGTELESLSLVDLIRTAAKNAEQKTLFNNAAQVWNHTF
YWNSMRPGGGGEPGGTLGEMIKDAFGSYDEFKKQFVTAGTTQFGSGYAWLVKDGEKLVVTKTPNAETPITDESKLPLLNM
DVWEHAYYLDYQNLRPDYENAFADNLINWEFAEKNLERVFAG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=191, Percent_Identity=42.9319371727749, Blast_Score=151, Evalue=4e-37,
Organism=Homo sapiens, GI67782305, Length=191, Percent_Identity=42.9319371727749, Blast_Score=151, Evalue=4e-37,
Organism=Homo sapiens, GI67782309, Length=191, Percent_Identity=35.0785340314136, Blast_Score=111, Evalue=4e-25,
Organism=Escherichia coli, GI1787946, Length=198, Percent_Identity=52.020202020202, Blast_Score=212, Evalue=2e-56,
Organism=Escherichia coli, GI1790342, Length=201, Percent_Identity=41.7910447761194, Blast_Score=150, Evalue=6e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=203, Percent_Identity=36.9458128078818, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=202, Percent_Identity=36.6336633663366, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=36.8932038834951, Blast_Score=115, Evalue=4e-27,
Organism=Drosophila melanogaster, GI17136812, Length=194, Percent_Identity=37.6288659793814, Blast_Score=119, Evalue=9e-28,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22780; Mature: 22648

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTLPPLPYDENALAPYVSAQTLSFHYGKHHTGYLNNMNKAIAGTELESLSLVDLIRTA
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHCCCHHHCCCCHHHHHHHHHHHHH
AKNAEQKTLFNNAAQVWNHTFYWNSMRPGGGGEPGGTLGEMIKDAFGSYDEFKKQFVTAG
HCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC
TTQFGSGYAWLVKDGEKLVVTKTPNAETPITDESKLPLLNMDVWEHAYYLDYQNLRPDYE
CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEECHHHHHEEEECHHHCCCCHH
NAFADNLINWEFAEKNLERVFAG
HHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
AHTLPPLPYDENALAPYVSAQTLSFHYGKHHTGYLNNMNKAIAGTELESLSLVDLIRTA
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHCCCHHHCCCCHHHHHHHHHHHHH
AKNAEQKTLFNNAAQVWNHTFYWNSMRPGGGGEPGGTLGEMIKDAFGSYDEFKKQFVTAG
HCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC
TTQFGSGYAWLVKDGEKLVVTKTPNAETPITDESKLPLLNMDVWEHAYYLDYQNLRPDYE
CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEECHHHHHEEEECHHHCCCCHH
NAFADNLINWEFAEKNLERVFAG
HHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]