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The map label for this gene is rbfA

Identifier: 37523601

GI number: 37523601

Start: 4232141

End: 4232530

Strand: Direct

Name: rbfA

Synonym: glr4032

Alternate gene names: 37523601

Gene position: 4232141-4232530 (Clockwise)

Preceding gene: 37523600

Following gene: 37523602

Centisome position: 90.84

GC content: 63.08

Gene sequence:

>390_bases
ATGAAGACGCACCGACCAGCGAGAGTAGGCGAGTTAATCAAGCGCGAGGTGAGCGACATGCTGCTCAGGGGGCAGATCAA
AGATCCGCGCGTGGGAGCGGGCCTGGTGAGCGTCACCGATGTCGAAGTGACGGGCGATCTGCGCCAGGCCAAAATTTTTG
TGAGTATCTTCGGCACCCCCGAGGCGCAGAAGTTGACGATGATGGCCCTTGCGGAGGTGACCGGCTTTGTGCGCCAGGAA
ATCGGCCACCGCATCCGCCTGCGCTATACGCCCGAGATTGCCTTTGTGCAGGATCGGTCGCTGGAGCGGGGGGCGCGCAT
CACCCGTCTCATCGACGAGATCCGCGCCGAAGAGGAGGCCCGCGCCGCGCACAAGGAGGAGGGCAATTGA

Upstream 100 bases:

>100_bases
GCTGCACTAGTGATTACCTGCGCAAATATACTTAGATGCCATCATAGCGTCAACTTATTCATCTTTTGTTACAGTTGCTA
CGTTTGAGGAGGGGCCACCG

Downstream 100 bases:

>100_bases
ATCGCCGCGACCTGGTCTTGTGTTTGGCGGCGGGGTGGCTCTGGCCTGTCGCGGCCCGCGCCCAGCGGGTGATCAACTAC
CCGCCGCGGGTGCTGGGCAC

Product: ribosome binding facror A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKTHRPARVGELIKREVSDMLLRGQIKDPRVGAGLVSVTDVEVTGDLRQAKIFVSIFGTPEAQKLTMMALAEVTGFVRQE
IGHRIRLRYTPEIAFVQDRSLERGARITRLIDEIRAEEEARAAHKEEGN

Sequences:

>Translated_129_residues
MKTHRPARVGELIKREVSDMLLRGQIKDPRVGAGLVSVTDVEVTGDLRQAKIFVSIFGTPEAQKLTMMALAEVTGFVRQE
IGHRIRLRYTPEIAFVQDRSLERGARITRLIDEIRAEEEARAAHKEEGN
>Mature_129_residues
MKTHRPARVGELIKREVSDMLLRGQIKDPRVGAGLVSVTDVEVTGDLRQAKIFVSIFGTPEAQKLTMMALAEVTGFVRQE
IGHRIRLRYTPEIAFVQDRSLERGARITRLIDEIRAEEEARAAHKEEGN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=126, Percent_Identity=34.1269841269841, Blast_Score=79, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_GLOVI (Q7NE48)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_926978.1
- ProteinModelPortal:   Q7NE48
- SMR:   Q7NE48
- GeneID:   2602435
- GenomeReviews:   BA000045_GR
- KEGG:   gvi:glr4032
- NMPDR:   fig|251221.1.peg.4032
- HOGENOM:   HBG751055
- OMA:   INAKVFI
- BioCyc:   GVIO251221:GLR4032-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14550; Mature: 14550

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTHRPARVGELIKREVSDMLLRGQIKDPRVGAGLVSVTDVEVTGDLRQAKIFVSIFGTP
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHEEEEEEEECCC
EAQKLTMMALAEVTGFVRQEIGHRIRLRYTPEIAFVQDRSLERGARITRLIDEIRAEEEA
CHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
RAAHKEEGN
HHHHCCCCC
>Mature Secondary Structure
MKTHRPARVGELIKREVSDMLLRGQIKDPRVGAGLVSVTDVEVTGDLRQAKIFVSIFGTP
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHEEEEEEEECCC
EAQKLTMMALAEVTGFVRQEIGHRIRLRYTPEIAFVQDRSLERGARITRLIDEIRAEEEA
CHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
RAAHKEEGN
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292