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The map label for this gene is yabJ [H]

Identifier: 37523576

GI number: 37523576

Start: 4211117

End: 4211494

Strand: Direct

Name: yabJ [H]

Synonym: glr4007

Alternate gene names: 37523576

Gene position: 4211117-4211494 (Clockwise)

Preceding gene: 37523575

Following gene: 37523577

Centisome position: 90.39

GC content: 60.58

Gene sequence:

>378_bases
GTGAAGATCATCCGCGGCGAGCACAACCCCTACCCCTACTCTCCCGCCGTTATCCACGGGGGACTGGTCTACACCGCCGG
CCAGATCCCCCTGGTGCCCGATAGTGGCGAAGTCGTCACCGGCGACATCGAAGCCCAGGCCCACCAGACGCTCACCAACC
TGCACAACGTGCTCAAGCTTGCAGGCAGCGATCTGGGCCAGGTGATCAAGGTGACGGTGTTTCTGATCGACATGGCCGAT
TTTGCCGGCCTCAACCGTGTCTACCAGACATTTTTTACCGACCACCTGCCCGCGCGCTCCTGCGTGGCGGTCGCCGCTTT
ACCCCAGGGGGTGAAAGTCGAAATCGAAGCGGTGGCGGCTTTGAATGAAAGTAATTGA

Upstream 100 bases:

>100_bases
CGGCGGTCAACCGCCTGGGCGACGAGGTGGCCATGGTTGCCCAGGTGCGCGCCATCGTCGAAGCGGTCGAGCAAGCCTGT
GTGTTCGAGCGGGTTTCCCC

Downstream 100 bases:

>100_bases
CTCGCTATAGTAAATTCATGCGCCCGTAGCCTAGAGGATCAGGCAGCGACCTTCTAAGTCGCCTTACACAGGTTCAAATC
CTGTCGGGCGCGCTAAAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKIIRGEHNPYPYSPAVIHGGLVYTAGQIPLVPDSGEVVTGDIEAQAHQTLTNLHNVLKLAGSDLGQVIKVTVFLIDMAD
FAGLNRVYQTFFTDHLPARSCVAVAALPQGVKVEIEAVAALNESN

Sequences:

>Translated_125_residues
MKIIRGEHNPYPYSPAVIHGGLVYTAGQIPLVPDSGEVVTGDIEAQAHQTLTNLHNVLKLAGSDLGQVIKVTVFLIDMAD
FAGLNRVYQTFFTDHLPARSCVAVAALPQGVKVEIEAVAALNESN
>Mature_125_residues
MKIIRGEHNPYPYSPAVIHGGLVYTAGQIPLVPDSGEVVTGDIEAQAHQTLTNLHNVLKLAGSDLGQVIKVTVFLIDMAD
FAGLNRVYQTFFTDHLPARSCVAVAALPQGVKVEIEAVAALNESN

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=108, Percent_Identity=45.3703703703704, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI87082396, Length=124, Percent_Identity=46.7741935483871, Blast_Score=111, Evalue=2e-26,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=45.1612903225806, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI1787245, Length=108, Percent_Identity=26.8518518518519, Blast_Score=60, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71982068, Length=112, Percent_Identity=50, Blast_Score=104, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI71982075, Length=112, Percent_Identity=50, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI25148896, Length=112, Percent_Identity=50, Blast_Score=104, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=49.5049504950495, Blast_Score=105, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=107, Percent_Identity=45.7943925233645, Blast_Score=99, Evalue=2e-22,
Organism=Drosophila melanogaster, GI19921376, Length=108, Percent_Identity=45.3703703703704, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13349; Mature: 13349

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIRGEHNPYPYSPAVIHGGLVYTAGQIPLVPDSGEVVTGDIEAQAHQTLTNLHNVLKL
CCCCCCCCCCCCCCCCEEECCEEEECCCCEECCCCCCEEECCCHHHHHHHHHHHHHHHHH
AGSDLGQVIKVTVFLIDMADFAGLNRVYQTFFTDHLPARSCVAVAALPQGVKVEIEAVAA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHECCCCCCEEEEEEEEE
LNESN
CCCCC
>Mature Secondary Structure
MKIIRGEHNPYPYSPAVIHGGLVYTAGQIPLVPDSGEVVTGDIEAQAHQTLTNLHNVLKL
CCCCCCCCCCCCCCCCEEECCEEEECCCCEECCCCCCEEECCCHHHHHHHHHHHHHHHHH
AGSDLGQVIKVTVFLIDMADFAGLNRVYQTFFTDHLPARSCVAVAALPQGVKVEIEAVAA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHECCCCCCEEEEEEEEE
LNESN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]