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The map label for this gene is rbcR [H]

Identifier: 37523561

GI number: 37523561

Start: 4196264

End: 4197160

Strand: Direct

Name: rbcR [H]

Synonym: glr3992

Alternate gene names: 37523561

Gene position: 4196264-4197160 (Clockwise)

Preceding gene: 37523560

Following gene: 37523562

Centisome position: 90.07

GC content: 62.32

Gene sequence:

>897_bases
ATGACCCTCGAACAGTTGCGCATCTTTATCGCCGTTGCCGAGCACCTGCACTTTACGCGCGCTGCCCAAACTTTGCATCT
GACCCAACCGGCGGTTAGCGCCGCCATCGCTTCGCTCGAAGGCGAGTACGCCGTGCCGCTGTTTCACCGTGTCGGCCGCC
ACGTCGAACTGGCGGAAGCCGGACGGTTGCTGCTGGAGCAGGCGCGCAAGATCATGAAGCAAGTCGAGTACACCCAGCGG
GTTTTGCAGGAACTCAAAGGTCTTGAGCGCGGCGAGCTGTTTATCGCCGCGAGCCAGACGATTGCCAACTACTGGCTGCC
CATCCGCCTGCACCGCTTTCATCAGGTCTATCCGGGCATCCAGGTGCGCCTGACTATCGACAGCAGCCCCAACATTACCC
GCCAGGTGCTGGAGGGCTCCGCCGACCTGGGGCTGGTCGAGGGCAAGACCGAACCCAACGCACAACTGACCGACGAGGAG
ATCGCAGGCGATCACCTAGTGCTCATCGTCGGGCGCTCGCATCCCTGGTGGGAAAAAGAACACATCACCTTTGCAGATCT
CACCGAGGTGCAGTGGGTGGTGCGCGAGACCGGTTCCGGCACACGGGTGCTTTTTGAGGACGAACTGGAACTGGAGGGGA
TCGATCCCCACAAGTTGCCCATCGCCCTGGAGTTGCCGAGCGGCGAGATGATCAAAGCGGCGGTGGAGGCCGGGGCCGGG
GTGGCGGTCATCTCCGAACTCTTAGTCACCCGCGAAGTCAAACTCGGCACGCTGCGCACCCCCGAAGGTGTGCGCCTCAG
ACGTCCCTTTCGGTTGCTGATGCACCGGCAGCGACACCCCACCAAAGCATCGCTCGCCCTGGTTCACTCCCTGAGCGAAG
TCACCCAGGTACTCTGA

Upstream 100 bases:

>100_bases
CCTTTGCGCGCCGCCGCAACATTCTGTACGTTGGAATTGCCGCGATCGTGCTGGCGGTATTGGTTCACAGTTTGACGTTC
AGTTAGCCCCCCCTTGCCGG

Downstream 100 bases:

>100_bases
GCGTGGCAACGGCAGTACGCGCCCATGTCTGGGTCGGCGGCAAAGTGCAGGGGGTATACTTTCGGGCGGCTACCCGCGAA
GCAGCGCAACGCCAGGGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MTLEQLRIFIAVAEHLHFTRAAQTLHLTQPAVSAAIASLEGEYAVPLFHRVGRHVELAEAGRLLLEQARKIMKQVEYTQR
VLQELKGLERGELFIAASQTIANYWLPIRLHRFHQVYPGIQVRLTIDSSPNITRQVLEGSADLGLVEGKTEPNAQLTDEE
IAGDHLVLIVGRSHPWWEKEHITFADLTEVQWVVRETGSGTRVLFEDELELEGIDPHKLPIALELPSGEMIKAAVEAGAG
VAVISELLVTREVKLGTLRTPEGVRLRRPFRLLMHRQRHPTKASLALVHSLSEVTQVL

Sequences:

>Translated_298_residues
MTLEQLRIFIAVAEHLHFTRAAQTLHLTQPAVSAAIASLEGEYAVPLFHRVGRHVELAEAGRLLLEQARKIMKQVEYTQR
VLQELKGLERGELFIAASQTIANYWLPIRLHRFHQVYPGIQVRLTIDSSPNITRQVLEGSADLGLVEGKTEPNAQLTDEE
IAGDHLVLIVGRSHPWWEKEHITFADLTEVQWVVRETGSGTRVLFEDELELEGIDPHKLPIALELPSGEMIKAAVEAGAG
VAVISELLVTREVKLGTLRTPEGVRLRRPFRLLMHRQRHPTKASLALVHSLSEVTQVL
>Mature_297_residues
TLEQLRIFIAVAEHLHFTRAAQTLHLTQPAVSAAIASLEGEYAVPLFHRVGRHVELAEAGRLLLEQARKIMKQVEYTQRV
LQELKGLERGELFIAASQTIANYWLPIRLHRFHQVYPGIQVRLTIDSSPNITRQVLEGSADLGLVEGKTEPNAQLTDEEI
AGDHLVLIVGRSHPWWEKEHITFADLTEVQWVVRETGSGTRVLFEDELELEGIDPHKLPIALELPSGEMIKAAVEAGAGV
AVISELLVTREVKLGTLRTPEGVRLRRPFRLLMHRQRHPTKASLALVHSLSEVTQVL

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=286, Percent_Identity=33.9160839160839, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI145693105, Length=245, Percent_Identity=28.9795918367347, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790399, Length=262, Percent_Identity=28.6259541984733, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI157672245, Length=216, Percent_Identity=29.6296296296296, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787530, Length=251, Percent_Identity=27.0916334661355, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=27.2357723577236, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787879, Length=260, Percent_Identity=29.6153846153846, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1789173, Length=278, Percent_Identity=29.136690647482, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082132, Length=262, Percent_Identity=29.0076335877863, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788887, Length=197, Percent_Identity=31.4720812182741, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790208, Length=269, Percent_Identity=26.7657992565056, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=25.1677852348993, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=25.1012145748988, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787601, Length=174, Percent_Identity=25.2873563218391, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=23.3870967741935, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789204, Length=300, Percent_Identity=26.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081904, Length=201, Percent_Identity=28.8557213930348, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367136, Length=160, Percent_Identity=33.75, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787128, Length=147, Percent_Identity=30.6122448979592, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787949, Length=96, Percent_Identity=38.5416666666667, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787806, Length=246, Percent_Identity=27.2357723577236, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI48994962, Length=154, Percent_Identity=33.1168831168831, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33429; Mature: 33298

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEQLRIFIAVAEHLHFTRAAQTLHLTQPAVSAAIASLEGEYAVPLFHRVGRHVELAEA
CCHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHCCCCEECHHHHHCCCCEEHHHH
GRLLLEQARKIMKQVEYTQRVLQELKGLERGELFIAASQTIANYWLPIRLHRFHQVYPGI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCE
QVRLTIDSSPNITRQVLEGSADLGLVEGKTEPNAQLTDEEIAGDHLVLIVGRSHPWWEKE
EEEEEECCCCCHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCC
HITFADLTEVQWVVRETGSGTRVLFEDELELEGIDPHKLPIALELPSGEMIKAAVEAGAG
CEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCC
VAVISELLVTREVKLGTLRTPEGVRLRRPFRLLMHRQRHPTKASLALVHSLSEVTQVL
HHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TLEQLRIFIAVAEHLHFTRAAQTLHLTQPAVSAAIASLEGEYAVPLFHRVGRHVELAEA
CHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHCCCCEECHHHHHCCCCEEHHHH
GRLLLEQARKIMKQVEYTQRVLQELKGLERGELFIAASQTIANYWLPIRLHRFHQVYPGI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCE
QVRLTIDSSPNITRQVLEGSADLGLVEGKTEPNAQLTDEEIAGDHLVLIVGRSHPWWEKE
EEEEEECCCCCHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCC
HITFADLTEVQWVVRETGSGTRVLFEDELELEGIDPHKLPIALELPSGEMIKAAVEAGAG
CEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCC
VAVISELLVTREVKLGTLRTPEGVRLRRPFRLLMHRQRHPTKASLALVHSLSEVTQVL
HHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA