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The map label for this gene is yciO [H]

Identifier: 37523508

GI number: 37523508

Start: 4136159

End: 4136830

Strand: Reverse

Name: yciO [H]

Synonym: gll3939

Alternate gene names: 37523508

Gene position: 4136830-4136159 (Counterclockwise)

Preceding gene: 37523511

Following gene: 37523507

Centisome position: 88.79

GC content: 66.52

Gene sequence:

>672_bases
ATGGCCAACACTTACTATCTGCACCCCAAAGACCCGCAGCCCGAACGCCTCGGGCGGATTGTGCAGGCGCTGCGCGCTGG
GGCCGTCTTGCTCTATCCCACCGACACCACCTACGCCATCGGCTGCGATTTGCTCCACAAGGGCGCCATCGAGCGGGTGC
AGCGCATCAAGCGCCTCAGCAACGACAAGCCGCTCACCTTTTTGTGCCCGTCGCTTTCGAACGTGGCCACCTACGCCCGG
GTTGGCGACGACGCCTACCGCCTGATGCGCCACTTGCTCCCCGGTCCCTATACTTTTTTGCTGCCCGCCACCCGCGCCCT
GCCGAAGCTGGTGCTCGATCCTAAACGCCGCACCACCGGCATCCGAGTCCCCGACCACCCGCTCTGCCAGGCGCTGCTTG
CGGGATTGGGCAACCCGCTCATCTCCACTTCCGCCCGCTCGGCGGATGGGAGCGAAATCCGCTACGAATACGAACTATTC
GAAGCGCTCGCCCCGGTGGTCGATGGGATCGTCGAATTGGACCCCCCGGCCCAGGACGGCCTGCTCCTCACCCAGGTCTC
GACGGTGATCGACCTGAGCGGGGAGCAACCTGTCGTCGTGCGGCGGGGACTCGGCTGGGAGCGGGCGGCCACCTTTTTGC
AGCGGGCCGGGTACGCCCCTGAGCCCGCCTGA

Upstream 100 bases:

>100_bases
TCGTGCCACACCGCACCGCTGGGCGGCAAGCGCTTGCAGGTGCGGCGCGATCGTTGAAACTGAAAATAGAGGAGCGACAC
CGCCCCCAGGAGGTCCGGCC

Downstream 100 bases:

>100_bases
GGGCACTTGGAGAGGATTTCGTTTTACAGCCGGACTCCCGGGGGCTATGCTCTAAAGTTGGCATGGTGCCTGAGCGGTGT
TGTGAGGAGTATGGCAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MANTYYLHPKDPQPERLGRIVQALRAGAVLLYPTDTTYAIGCDLLHKGAIERVQRIKRLSNDKPLTFLCPSLSNVATYAR
VGDDAYRLMRHLLPGPYTFLLPATRALPKLVLDPKRRTTGIRVPDHPLCQALLAGLGNPLISTSARSADGSEIRYEYELF
EALAPVVDGIVELDPPAQDGLLLTQVSTVIDLSGEQPVVVRRGLGWERAATFLQRAGYAPEPA

Sequences:

>Translated_223_residues
MANTYYLHPKDPQPERLGRIVQALRAGAVLLYPTDTTYAIGCDLLHKGAIERVQRIKRLSNDKPLTFLCPSLSNVATYAR
VGDDAYRLMRHLLPGPYTFLLPATRALPKLVLDPKRRTTGIRVPDHPLCQALLAGLGNPLISTSARSADGSEIRYEYELF
EALAPVVDGIVELDPPAQDGLLLTQVSTVIDLSGEQPVVVRRGLGWERAATFLQRAGYAPEPA
>Mature_222_residues
ANTYYLHPKDPQPERLGRIVQALRAGAVLLYPTDTTYAIGCDLLHKGAIERVQRIKRLSNDKPLTFLCPSLSNVATYARV
GDDAYRLMRHLLPGPYTFLLPATRALPKLVLDPKRRTTGIRVPDHPLCQALLAGLGNPLISTSARSADGSEIRYEYELFE
ALAPVVDGIVELDPPAQDGLLLTQVSTVIDLSGEQPVVVRRGLGWERAATFLQRAGYAPEPA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=213, Percent_Identity=34.7417840375587, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI87081864, Length=207, Percent_Identity=41.0628019323672, Blast_Score=160, Evalue=4e-41,
Organism=Escherichia coli, GI2367210, Length=168, Percent_Identity=30.3571428571429, Blast_Score=67, Evalue=9e-13,
Organism=Drosophila melanogaster, GI78707274, Length=176, Percent_Identity=30.6818181818182, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 24480; Mature: 24348

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANTYYLHPKDPQPERLGRIVQALRAGAVLLYPTDTTYAIGCDLLHKGAIERVQRIKRLS
CCCCEECCCCCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC
NDKPLTFLCPSLSNVATYARVGDDAYRLMRHLLPGPYTFLLPATRALPKLVLDPKRRTTG
CCCCEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCC
IRVPDHPLCQALLAGLGNPLISTSARSADGSEIRYEYELFEALAPVVDGIVELDPPAQDG
CCCCCCHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LLLTQVSTVIDLSGEQPVVVRRGLGWERAATFLQRAGYAPEPA
CHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ANTYYLHPKDPQPERLGRIVQALRAGAVLLYPTDTTYAIGCDLLHKGAIERVQRIKRLS
CCCEECCCCCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC
NDKPLTFLCPSLSNVATYARVGDDAYRLMRHLLPGPYTFLLPATRALPKLVLDPKRRTTG
CCCCEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCC
IRVPDHPLCQALLAGLGNPLISTSARSADGSEIRYEYELFEALAPVVDGIVELDPPAQDG
CCCCCCHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LLLTQVSTVIDLSGEQPVVVRRGLGWERAATFLQRAGYAPEPA
CHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]