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The map label for this gene is tnpR [H]

Identifier: 37523455

GI number: 37523455

Start: 4093352

End: 4094782

Strand: Direct

Name: tnpR [H]

Synonym: glr3886

Alternate gene names: 37523455

Gene position: 4093352-4094782 (Clockwise)

Preceding gene: 37523444

Following gene: 37523456

Centisome position: 87.86

GC content: 62.26

Gene sequence:

>1431_bases
ATGGGAAAGCTGGCGCGGTTGCCGATTGGTGCGGCGGGTCTGGTGTACGGGTATGCGCGCGTGAGCACTGCCGAGCAAGC
GGACAGTCAGCACGCGCTTACTCAGCAGTGCGAGCGCCTGAAGCGGGCTGGGACGGATGAGCTTCTGATTGATGTGCAGT
CGGGCCGCAAGGATGACCGGCGCAACTTTCAGAAGCTGCTACGTCTGGCAGAGGGTGGGCATGTACGGGAAATCGTGGCG
ACGCGGCTTGATCGGTTGGGCCGCAACGTCCGGGCGATCCTGGAATTGGTGGACAAGCTTGACGATCTGGGTGTTGCCCT
TCGCCTGCTGGATGAGAAGGTGGACACTTCCACCGCATCGGGGCGCATGTACCTGACGATCCGGGCTGCCGTCGATGAGC
AAGAATCGCGTTTGTTGAGTGAACGGGTCAGCCACGGCATGAAACACCGGCGATTGCGGGGTGCGGCCCACCCGAAACCA
CCCTTCGGCTACCGTATGGGGGCAGACGATCGCTATGTGCTCAACGTGACGGCTTTGTGTCGTATTGCCGATCACTCCGA
ATGGACGATCGAGGGCATTGCGCGGTGGCTGATCGCCGAATTCTTGAGAACCGGCCGGGTGCGCGGCACCCTCAAAGGTT
GTGTCGAGATGTTCGGTTTCACTCCCTTCACCCACATTGGGTTTAGCGGGTGGCTTACCTCCCCTGCCTTGCGTGGTCAC
ATCGTCTATGGCGACGGCACGACCTATCCCGACGCTCACCCGGCCTATCTGGATGCCGACACTGCCAGGGCGGCGAAGCT
GGCCCTAGAGCGCGGCAAACAGCTCGGGGGGTGGGGAAGTGCGGAGGGGCCACGCAATCGCCCGCTGACCGGCCTGGTAC
GGTGCCCCCTCTGCAGTGGAGGCACCTACTACAGAGATCAGCGCACCCAGAGAAAGATGGCTGATGGCTCCACGAAGACG
TACCGGAGGGAGTCCTACCACTGTTCGGCTGCGGGCCGCGAGGGCAGTTGCTCAAACACGAAAAGCGTCACCGTGGAATG
CATCGAGGCCGCTATCGAGGCGGCATTGCGGGCAAAGGCCGTCGAACTAGCGTCCATGGTCTCGGCCGGTCTCGGGCAGC
CGGTGGAGGAACCGGAGACGGTCAAGGCACTGCGCGCGCAACTGTCGGCACTGGAAGCGATTCCCAACCCGGTCGGGGCG
CTTCAAGATGCGATGGGCCATTTGCGCCGCCAGATCGATAATCTTTTGGGCGCGGCGGCGGGGGAACGCAAAGAAGCGGA
CCTCAAGGCCGAGCAGCTACATCAGGCGTTCGCTGATCCGGATTTCTGGGCGACGATTACCCAGGAAGAACGGCGCACGG
TTTACAGGGATCTCGTCCGCAAAATACTGATCGCCGGTGGCAAAGTGGTGGCCGTCGAACTGATGATCTGA

Upstream 100 bases:

>100_bases
ATTTCCTTGAGTTGGGCGTAAGCGTCGAGGCCCTGGAGGTTGCTGAAGCAAAAGCTTCCAATAGTGGTAAAATTTTCCCA
GTGTTAGACGGAGCCCGGGA

Downstream 100 bases:

>100_bases
TACCGGCGCACCACCACCTGTAGCGCAGAAGCCCCCTGGATCGAGTCTGGGGGGCTTTTTGCCGTGCAGGCATGGAGCGG
AGACAAAATTCTCAGCAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MGKLARLPIGAAGLVYGYARVSTAEQADSQHALTQQCERLKRAGTDELLIDVQSGRKDDRRNFQKLLRLAEGGHVREIVA
TRLDRLGRNVRAILELVDKLDDLGVALRLLDEKVDTSTASGRMYLTIRAAVDEQESRLLSERVSHGMKHRRLRGAAHPKP
PFGYRMGADDRYVLNVTALCRIADHSEWTIEGIARWLIAEFLRTGRVRGTLKGCVEMFGFTPFTHIGFSGWLTSPALRGH
IVYGDGTTYPDAHPAYLDADTARAAKLALERGKQLGGWGSAEGPRNRPLTGLVRCPLCSGGTYYRDQRTQRKMADGSTKT
YRRESYHCSAAGREGSCSNTKSVTVECIEAAIEAALRAKAVELASMVSAGLGQPVEEPETVKALRAQLSALEAIPNPVGA
LQDAMGHLRRQIDNLLGAAAGERKEADLKAEQLHQAFADPDFWATITQEERRTVYRDLVRKILIAGGKVVAVELMI

Sequences:

>Translated_476_residues
MGKLARLPIGAAGLVYGYARVSTAEQADSQHALTQQCERLKRAGTDELLIDVQSGRKDDRRNFQKLLRLAEGGHVREIVA
TRLDRLGRNVRAILELVDKLDDLGVALRLLDEKVDTSTASGRMYLTIRAAVDEQESRLLSERVSHGMKHRRLRGAAHPKP
PFGYRMGADDRYVLNVTALCRIADHSEWTIEGIARWLIAEFLRTGRVRGTLKGCVEMFGFTPFTHIGFSGWLTSPALRGH
IVYGDGTTYPDAHPAYLDADTARAAKLALERGKQLGGWGSAEGPRNRPLTGLVRCPLCSGGTYYRDQRTQRKMADGSTKT
YRRESYHCSAAGREGSCSNTKSVTVECIEAAIEAALRAKAVELASMVSAGLGQPVEEPETVKALRAQLSALEAIPNPVGA
LQDAMGHLRRQIDNLLGAAAGERKEADLKAEQLHQAFADPDFWATITQEERRTVYRDLVRKILIAGGKVVAVELMI
>Mature_475_residues
GKLARLPIGAAGLVYGYARVSTAEQADSQHALTQQCERLKRAGTDELLIDVQSGRKDDRRNFQKLLRLAEGGHVREIVAT
RLDRLGRNVRAILELVDKLDDLGVALRLLDEKVDTSTASGRMYLTIRAAVDEQESRLLSERVSHGMKHRRLRGAAHPKPP
FGYRMGADDRYVLNVTALCRIADHSEWTIEGIARWLIAEFLRTGRVRGTLKGCVEMFGFTPFTHIGFSGWLTSPALRGHI
VYGDGTTYPDAHPAYLDADTARAAKLALERGKQLGGWGSAEGPRNRPLTGLVRCPLCSGGTYYRDQRTQRKMADGSTKTY
RRESYHCSAAGREGSCSNTKSVTVECIEAAIEAALRAKAVELASMVSAGLGQPVEEPETVKALRAQLSALEAIPNPVGAL
QDAMGHLRRQIDNLLGAAAGERKEADLKAEQLHQAFADPDFWATITQEERRTVYRDLVRKILIAGGKVVAVELMI

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=148, Percent_Identity=33.7837837837838, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 52322; Mature: 52191

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLARLPIGAAGLVYGYARVSTAEQADSQHALTQQCERLKRAGTDELLIDVQSGRKDDR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
RNFQKLLRLAEGGHVREIVATRLDRLGRNVRAILELVDKLDDLGVALRLLDEKVDTSTAS
HHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GRMYLTIRAAVDEQESRLLSERVSHGMKHRRLRGAAHPKPPFGYRMGADDRYVLNVTALC
CEEEEEEEEHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHH
RIADHSEWTIEGIARWLIAEFLRTGRVRGTLKGCVEMFGFTPFTHIGFSGWLTSPALRGH
HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCCHHHHCCCCCCCE
IVYGDGTTYPDAHPAYLDADTARAAKLALERGKQLGGWGSAEGPRNRPLTGLVRCPLCSG
EEECCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCC
GTYYRDQRTQRKMADGSTKTYRRESYHCSAAGREGSCSNTKSVTVECIEAAIEAALRAKA
CCCHHHHHHHHHHHCCCCHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VELASMVSAGLGQPVEEPETVKALRAQLSALEAIPNPVGALQDAMGHLRRQIDNLLGAAA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
GERKEADLKAEQLHQAFADPDFWATITQEERRTVYRDLVRKILIAGGKVVAVELMI
CCCCHHCCCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
>Mature Secondary Structure 
GKLARLPIGAAGLVYGYARVSTAEQADSQHALTQQCERLKRAGTDELLIDVQSGRKDDR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
RNFQKLLRLAEGGHVREIVATRLDRLGRNVRAILELVDKLDDLGVALRLLDEKVDTSTAS
HHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GRMYLTIRAAVDEQESRLLSERVSHGMKHRRLRGAAHPKPPFGYRMGADDRYVLNVTALC
CEEEEEEEEHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHH
RIADHSEWTIEGIARWLIAEFLRTGRVRGTLKGCVEMFGFTPFTHIGFSGWLTSPALRGH
HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCCHHHHCCCCCCCE
IVYGDGTTYPDAHPAYLDADTARAAKLALERGKQLGGWGSAEGPRNRPLTGLVRCPLCSG
EEECCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCC
GTYYRDQRTQRKMADGSTKTYRRESYHCSAAGREGSCSNTKSVTVECIEAAIEAALRAKA
CCCHHHHHHHHHHHCCCCHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VELASMVSAGLGQPVEEPETVKALRAQLSALEAIPNPVGALQDAMGHLRRQIDNLLGAAA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
GERKEADLKAEQLHQAFADPDFWATITQEERRTVYRDLVRKILIAGGKVVAVELMI
CCCCHHCCCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2997130 [H]