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The map label for this gene is rbgA [H]

Identifier: 37523435

GI number: 37523435

Start: 4071096

End: 4071986

Strand: Direct

Name: rbgA [H]

Synonym: glr3866

Alternate gene names: 37523435

Gene position: 4071096-4071986 (Clockwise)

Preceding gene: 37523434

Following gene: 37523436

Centisome position: 87.38

GC content: 67.34

Gene sequence:

>891_bases
ATGGAAAGCGAATACTCCAATCTCATCCAGTGGTACCCGGGCCATATCGCCAAGGCTCGCCGCCAGCTTGCCGAGCAGCT
CAAGCAGGTGGACCTGGTGCTGGAGGTGCTCGATGCGCGCATTGCCCATTCCTCACGCCACGACGAGATCCAGAAACTGG
CCGGTGAGCGCCCGCGCCTGGTGGTGCTCAACCGCGCCGATATGATCCCGCAGGGGATGCTTCGCAGCTGGCTGAAGTGG
TTCGCCGCCCGGGGCGAAGCGGCCTACCCGACCAACGCCCAAAACGGCGACGGGGTGCGCGCCGTGCTCAAAGCCGCCCA
GCAGGGGGCCGTGGCCGTCAACCAGCGCCGTGCCGGGCGGGGGATGCGACCCCGGGCGGTGCGCGTGGCGGTGATCGGTT
TTCCAAATGTCGGCAAGTCGGCCTTGATCAACCGGCTGGTGGGCAAGCGGGCCGTCGAAAGTGCCGCCAAACCCGGGGTG
ACCCGTGCCCTGCGCTGGGTACGCATTGCCGATGTGATCGATTTACTCGATAGCCCCGGCATTTTGCCGCCGCGCCTGAA
CGATCAGCGCGCGGCGGCCAAACTCGCCATCTGCGACGACATCGGCCAGGCGGCCTACACCACTTCTCGGGTGGCAACCC
TCGCGGCTGAGTTGCTCACCCCGCTGGTGCCGCGACGGCTCGCCGAGCGCTTCGGGGCCGACCCGCTCGCCGTCACCGCC
GAGGAGTGGCTCGAACAGGTAGCCCGGCACAAGTACCATGGCAATCTCGACCGTGCCGCCGAGGCGCTATTGGGCGATTT
TCGCCGCGGTCAGTTGGGAGCAATTGCCCTGGAGGCACCGCCGGAGGAGCCGCTGGTACCGCAGGCAGAGGCCGAATGCG
AGGAGGGATAA

Upstream 100 bases:

>100_bases
TTAGAGTTATGCAAAGCAGTTCATCACCCATTCAACACGCAGACTGGTTCGACTGGTTTCACAAAGCGCTATGGTGGGCT
TGTTCAGGCTTTTGGGCGGC

Downstream 100 bases:

>100_bases
GTGCACCGAATCAACAAGGCGGTCGATATTGTCGACTTTTGGTTCTGCGAGCCGGAACACCCCGAGTACGGCCAGTTTCG
CTGGGAGTGGTTTACCCAGG

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MESEYSNLIQWYPGHIAKARRQLAEQLKQVDLVLEVLDARIAHSSRHDEIQKLAGERPRLVVLNRADMIPQGMLRSWLKW
FAARGEAAYPTNAQNGDGVRAVLKAAQQGAVAVNQRRAGRGMRPRAVRVAVIGFPNVGKSALINRLVGKRAVESAAKPGV
TRALRWVRIADVIDLLDSPGILPPRLNDQRAAAKLAICDDIGQAAYTTSRVATLAAELLTPLVPRRLAERFGADPLAVTA
EEWLEQVARHKYHGNLDRAAEALLGDFRRGQLGAIALEAPPEEPLVPQAEAECEEG

Sequences:

>Translated_296_residues
MESEYSNLIQWYPGHIAKARRQLAEQLKQVDLVLEVLDARIAHSSRHDEIQKLAGERPRLVVLNRADMIPQGMLRSWLKW
FAARGEAAYPTNAQNGDGVRAVLKAAQQGAVAVNQRRAGRGMRPRAVRVAVIGFPNVGKSALINRLVGKRAVESAAKPGV
TRALRWVRIADVIDLLDSPGILPPRLNDQRAAAKLAICDDIGQAAYTTSRVATLAAELLTPLVPRRLAERFGADPLAVTA
EEWLEQVARHKYHGNLDRAAEALLGDFRRGQLGAIALEAPPEEPLVPQAEAECEEG
>Mature_296_residues
MESEYSNLIQWYPGHIAKARRQLAEQLKQVDLVLEVLDARIAHSSRHDEIQKLAGERPRLVVLNRADMIPQGMLRSWLKW
FAARGEAAYPTNAQNGDGVRAVLKAAQQGAVAVNQRRAGRGMRPRAVRVAVIGFPNVGKSALINRLVGKRAVESAAKPGV
TRALRWVRIADVIDLLDSPGILPPRLNDQRAAAKLAICDDIGQAAYTTSRVATLAAELLTPLVPRRLAERFGADPLAVTA
EEWLEQVARHKYHGNLDRAAEALLGDFRRGQLGAIALEAPPEEPLVPQAEAECEEG

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=313, Percent_Identity=28.7539936102236, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI45643129, Length=196, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI45643127, Length=196, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI45593130, Length=196, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI296317324, Length=281, Percent_Identity=28.8256227758007, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI9506611, Length=281, Percent_Identity=28.8256227758007, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI7019419, Length=279, Percent_Identity=25.8064516129032, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193211047, Length=208, Percent_Identity=32.2115384615385, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17534827, Length=171, Percent_Identity=28.6549707602339, Blast_Score=77, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6320842, Length=199, Percent_Identity=31.6582914572864, Blast_Score=93, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6324381, Length=180, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6323744, Length=240, Percent_Identity=30, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321339, Length=335, Percent_Identity=23.2835820895522, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI85815858, Length=305, Percent_Identity=28.5245901639344, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI28572990, Length=203, Percent_Identity=30.5418719211823, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19922460, Length=279, Percent_Identity=26.1648745519713, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32404; Mature: 32404

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESEYSNLIQWYPGHIAKARRQLAEQLKQVDLVLEVLDARIAHSSRHDEIQKLAGERPRL
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCE
VVLNRADMIPQGMLRSWLKWFAARGEAAYPTNAQNGDGVRAVLKAAQQGAVAVNQRRAGR
EEECCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCC
GMRPRAVRVAVIGFPNVGKSALINRLVGKRAVESAAKPGVTRALRWVRIADVIDLLDSPG
CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
ILPPRLNDQRAAAKLAICDDIGQAAYTTSRVATLAAELLTPLVPRRLAERFGADPLAVTA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECH
EEWLEQVARHKYHGNLDRAAEALLGDFRRGQLGAIALEAPPEEPLVPQAEAECEEG
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MESEYSNLIQWYPGHIAKARRQLAEQLKQVDLVLEVLDARIAHSSRHDEIQKLAGERPRL
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCE
VVLNRADMIPQGMLRSWLKWFAARGEAAYPTNAQNGDGVRAVLKAAQQGAVAVNQRRAGR
EEECCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCC
GMRPRAVRVAVIGFPNVGKSALINRLVGKRAVESAAKPGVTRALRWVRIADVIDLLDSPG
CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
ILPPRLNDQRAAAKLAICDDIGQAAYTTSRVATLAAELLTPLVPRRLAERFGADPLAVTA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECH
EEWLEQVARHKYHGNLDRAAEALLGDFRRGQLGAIALEAPPEEPLVPQAEAECEEG
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]