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The map label for this gene is rnd [H]

Identifier: 37523316

GI number: 37523316

Start: 3958717

End: 3959304

Strand: Direct

Name: rnd [H]

Synonym: glr3747

Alternate gene names: 37523316

Gene position: 3958717-3959304 (Clockwise)

Preceding gene: 37523315

Following gene: 37523317

Centisome position: 84.97

GC content: 62.76

Gene sequence:

>588_bases
ATGGGTCGCCACCAGGTTCCCTATGTTCTAGTTACCGAAACGGCCCAGCTGTCGGAACTGGTCGATCGCTGGCAGACCCG
CAAAGTCCTCGCCGTCGACACCGAAACGGCCCACTGGCACCAGGTGAGTACCGGCAAGAACCGCGTATCGCTGCTGCAGG
TCTGGGACGGGACGAGCGAGGCGGTCTCGGTGATCGATTGCTTCGCGGTGGACCTCACAGCCTTTGTCGAGAAGACCATG
CGCAACTGGGAAATTGTCAAGCTCATCCACAACGCTCCCTACGACCTGGCCTACCTGGGAGGAGCCGCCCAAGCGCGCTC
GGTGGTCTGCACGCTGCAGATGGCGCGGTCGATCCCCACATCCAGACGCGGTGCCCTCGAGCGCAATTCCCTCAAAGCCC
TGAGCGCACACTTTTTGGGCATCGAACTGGACAAGCGCTACCAGGCGAGCAACTGGGCCCTCAGGCCGCTCACGGCCGAA
CAGCTCGATTACGCCGCCCTCGACCCGTGGGTGACCTTTCACATCTGGGAGCACATGCGGGCGCTGGTGGAGCCTGAGAA
CGAAGGCTTCGAGGGGTTGCTGGTGTGA

Upstream 100 bases:

>100_bases
GCGCCGGGGAATTTGCCCGCGGTGACCGGGGCCGGGCGGGCGGTTCCCCTGGGCGACGTGCATCCCGCCGGGTAAAGTAT
CAAGTAAAGGATTGTGGTCT

Downstream 100 bases:

>100_bases
CCGCCGAGGGACACCTGAAGGTGCTGCGCACCAATATTGCCGCCGTGCGGGCGATCGTCGAGACCGTGGCGGGCACCCTG
GGGCCGAAGGGCCTCGACGT

Product: ribonuclease D

Products: NA

Alternate protein names: RNase D [H]

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MGRHQVPYVLVTETAQLSELVDRWQTRKVLAVDTETAHWHQVSTGKNRVSLLQVWDGTSEAVSVIDCFAVDLTAFVEKTM
RNWEIVKLIHNAPYDLAYLGGAAQARSVVCTLQMARSIPTSRRGALERNSLKALSAHFLGIELDKRYQASNWALRPLTAE
QLDYAALDPWVTFHIWEHMRALVEPENEGFEGLLV

Sequences:

>Translated_195_residues
MGRHQVPYVLVTETAQLSELVDRWQTRKVLAVDTETAHWHQVSTGKNRVSLLQVWDGTSEAVSVIDCFAVDLTAFVEKTM
RNWEIVKLIHNAPYDLAYLGGAAQARSVVCTLQMARSIPTSRRGALERNSLKALSAHFLGIELDKRYQASNWALRPLTAE
QLDYAALDPWVTFHIWEHMRALVEPENEGFEGLLV
>Mature_194_residues
GRHQVPYVLVTETAQLSELVDRWQTRKVLAVDTETAHWHQVSTGKNRVSLLQVWDGTSEAVSVIDCFAVDLTAFVEKTMR
NWEIVKLIHNAPYDLAYLGGAAQARSVVCTLQMARSIPTSRRGALERNSLKALSAHFLGIELDKRYQASNWALRPLTAEQ
LDYAALDPWVTFHIWEHMRALVEPENEGFEGLLV

Specific function: Cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3' maturation of several stable RNAs [H]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HRDC domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR002121
- InterPro:   IPR010997
- InterPro:   IPR006292
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00570 HRDC [H]

EC number: =3.1.13.5 [H]

Molecular weight: Translated: 22071; Mature: 21940

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRHQVPYVLVTETAQLSELVDRWQTRKVLAVDTETAHWHQVSTGKNRVSLLQVWDGTSE
CCCCCCCEEEEECCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCEEEEEEEECCCHH
AVSVIDCFAVDLTAFVEKTMRNWEIVKLIHNAPYDLAYLGGAAQARSVVCTLQMARSIPT
HHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHCCCC
SRRGALERNSLKALSAHFLGIELDKRYQASNWALRPLTAEQLDYAALDPWVTFHIWEHMR
CCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCEECCCCHHHCCHHHCCCHHHHHHHHHHH
ALVEPENEGFEGLLV
HHHCCCCCCCCEECC
>Mature Secondary Structure 
GRHQVPYVLVTETAQLSELVDRWQTRKVLAVDTETAHWHQVSTGKNRVSLLQVWDGTSE
CCCCCCEEEEECCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCEEEEEEEECCCHH
AVSVIDCFAVDLTAFVEKTMRNWEIVKLIHNAPYDLAYLGGAAQARSVVCTLQMARSIPT
HHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHCCCC
SRRGALERNSLKALSAHFLGIELDKRYQASNWALRPLTAEQLDYAALDPWVTFHIWEHMR
CCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCEECCCCHHHCCHHHCCCHHHHHHHHHHH
ALVEPENEGFEGLLV
HHHCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]