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The map label for this gene is psaD

Identifier: 37523270

GI number: 37523270

Start: 3909169

End: 3909603

Strand: Direct

Name: psaD

Synonym: gvip502

Alternate gene names: 37523270

Gene position: 3909169-3909603 (Clockwise)

Preceding gene: 37523267

Following gene: 37523295

Centisome position: 83.91

GC content: 58.62

Gene sequence:

>435_bases
ATGGCGGACGTCAAGGAATTGCCTTTCGGCGGCAGCACGCCTTTGTTCGGTGGCAGCACCGGGGGATTGCTCCGCAAAGC
CCAGATCGAAGAAAAATATCTGATCGTTTGGAACAGCAAAGAGGAGCAGGTCTTCGAGATGCCGACCGGCGGGGCGGCGA
CGATGGTCGCCGGCACCAACGTCCTGTACCTGGCGCGCAAGGAGCAGTGCCACGCCCTGCACCGGCAGCTGGTCTCCACT
TTCAAAATTCGCGATTCGAAGATTTACCGGGTCTATCCCAACGGCGAACAGGTGCTGATTTTCCCGATGGACGGCGTCCC
CTCGGAGAAGTCCAATCCCGGTCGCGAGGTGGTCGGTTACGTGCCGCGCAAAATTGGCGACAATCCTAACCCGGTCGATG
TCAAGTTCACCGGCAAAGAAACCTTCGACGTGTAA

Upstream 100 bases:

>100_bases
ATTTCTTTACGCCGCCGGTGGTTCGAGCGCCTGTCGCGCCCTTGCCAGCGCGATCTGGGGCGACCTATCATGACGCAATA
TCCCGAGGAGAAACCACGCT

Downstream 100 bases:

>100_bases
AAGCGGGGGGCACCCTTCGGTGTGCCCCCGTGCCCATTATTTCTGGTGATACACCGGCAGCCGCTCCGGGTCCGTCTGGT
TGAGCGGCAAGTATTTCTGG

Product: photosystem I reaction centre subunit II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MADVKELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVST
FKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV

Sequences:

>Translated_144_residues
MADVKELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVST
FKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV
>Mature_143_residues
ADVKELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVSTF
KIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV

Specific function: PsaD can form complexes with ferredoxin and ferredoxin- oxidoreductase in photosystem I (PS I) reaction center

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psaD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSAD_GLOVI (Q7NF26)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_926647.1
- ProteinModelPortal:   Q7NF26
- SMR:   Q7NF26
- GeneID:   2602105
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.3701
- HOGENOM:   HBG286318
- OMA:   HNPRRIG
- ProtClustDB:   CLSK892482
- BioCyc:   GVIO251221:GLR3701-MONOMER
- GO:   GO:0015979
- InterPro:   IPR003685
- Gene3D:   G3DSA:3.30.1470.10

Pfam domain/function: PF02531 PsaD; SSF64234 PsaD

EC number: NA

Molecular weight: Translated: 15932; Mature: 15801

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADVKELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTN
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEECCC
VLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGY
EEEEECCHHHHHHHHHHHHHHEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHEE
VPRKIGDNPNPVDVKFTGKETFDV
CCHHCCCCCCEEEEEECCCEECCC
>Mature Secondary Structure 
ADVKELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTN
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEECCC
VLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGY
EEEEECCHHHHHHHHHHHHHHEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHEE
VPRKIGDNPNPVDVKFTGKETFDV
CCHHCCCCCCEEEEEECCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292