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The map label for this gene is lytR [H]

Identifier: 37523048

GI number: 37523048

Start: 3686490

End: 3687812

Strand: Reverse

Name: lytR [H]

Synonym: gll3479

Alternate gene names: 37523048

Gene position: 3687812-3686490 (Counterclockwise)

Preceding gene: 37523052

Following gene: 37523046

Centisome position: 79.15

GC content: 63.11

Gene sequence:

>1323_bases
GTGAGCAAAACCACCCAACCCAACCCCGCCCGCACCGCATGGAACAGCTGGATACTTCTGGGCGTGGCGGCTGTGTTGAC
CTTCCTGGGGGTGGTTGGAGGGATGACCCTTTGGCTGAGCAAGCCCTTCGAGAACGACCGCTACCGCGAAGCGAACGCCC
TGTTCGAACGGGCGAACCTGGGCCAGAACTTGAATATTTTGCTGCTGGGTACCGATATCGTCGCTTCGAGCAAAGCGACC
GCCACCGGCTTTCGACCACCGACCGATTCTTTTGAAGGGCGCAGCGACACGATCATGCTGGCCCACTTCAACCCGGAACA
AAAAAAAGTGAACGTGCTGTCGGTCCCCCGCGACACGCGCACCGACATCCCGGGTTTCGGCGCGCACAAGATCAACGTCG
CCAACGTCTACGGCGGTCCGGCCCTCGCGGCCCGGGCGATCGGCGAATTGACGGGGGCCGAAATCAACCGCTACGTGCGC
ATCAACCCCCAGGGGGTGGTGCAGCTCATCGACGTGTTGGGCGGGGTGACCGTCTACATCCCCAAGCGGATGAAATACAG
CGACGACTCCCAGCACCTCTATATCGACCTGCCCCAGGGCTGGCACACCCTGAGCGGTTTTCAGGCCCAGCAGTACCTGC
GCTTTCGCTCAGACGAACTGGGGGATATCGGCCGGGTGCAGCGCCAGCAGGCGCTGTTGCGCTCCCTTGGCGAGCGGGCG
GTCCGGCCCGAGAATTTGCTCAAAATCGGCGCCATCCTCGAAACGGTCCAGACCAACATCGACACCAACCTCACCATCGA
GGACATCTTTGACCTGGCCAAATTCGCCACCCAGATCGATCTGAAGCGCGATCTGCAGATGGTGCTGATGCCTGGCCGCT
TCAGCCGCCCGGGCGAGTACGACATCAGTTACTGGATCCCCAACCACAACAAGGCTTCCCAACTGGGAGTGCGCTTTTTT
GGGGCGACCGCCGAGGCAGGCGCCGAAGCGGACGAGCCTTTGGAGCCGCGCCAGGTGCGCCTCACGGTTCAAAATGCAAC
CGGCGTGCCCGGCATGGCCCGCCAGGTGGGCCGGGTTTTGCAGAAGCAGGGCTTCCAGGTGCTCGACTACGCCGCCGACC
GCCCCGATCCTATCTGGCGCACCGAGATCATCGCCCAGCAAGGCAACGCCGAGGCGGCCCAACTGGTGAGCGACGCCCTC
AAAGTCGGGGCGGTGCGCGTCGAGGCCACCGGCTCGATCTACACCGATGTCACCCTGCGCATCGGCAAAGACTGGCTGAA
GCGCCTCGAGCAGCAGCAGTCCAACAAGACCGCCTACCAGTAA

Upstream 100 bases:

>100_bases
TTACCGCTTGCATTGTTTGTCGCTCCGGATGCGATTCGGAATTTACCTTGCGATATAATTTGCAACGATGTCAACGTCAA
TGTTCTCGACGAGGCCTTGA

Downstream 100 bases:

>100_bases
GCACCTTCAGCGGACAAAGACGCTAAGCAGCACCGGCCCCAAGAGTCGGTGGTGCGCCGCACAGCCCAGGCCCGCCGTCA
GGGCCATCTGGGCGCGGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MSKTTQPNPARTAWNSWILLGVAAVLTFLGVVGGMTLWLSKPFENDRYREANALFERANLGQNLNILLLGTDIVASSKAT
ATGFRPPTDSFEGRSDTIMLAHFNPEQKKVNVLSVPRDTRTDIPGFGAHKINVANVYGGPALAARAIGELTGAEINRYVR
INPQGVVQLIDVLGGVTVYIPKRMKYSDDSQHLYIDLPQGWHTLSGFQAQQYLRFRSDELGDIGRVQRQQALLRSLGERA
VRPENLLKIGAILETVQTNIDTNLTIEDIFDLAKFATQIDLKRDLQMVLMPGRFSRPGEYDISYWIPNHNKASQLGVRFF
GATAEAGAEADEPLEPRQVRLTVQNATGVPGMARQVGRVLQKQGFQVLDYAADRPDPIWRTEIIAQQGNAEAAQLVSDAL
KVGAVRVEATGSIYTDVTLRIGKDWLKRLEQQQSNKTAYQ

Sequences:

>Translated_440_residues
MSKTTQPNPARTAWNSWILLGVAAVLTFLGVVGGMTLWLSKPFENDRYREANALFERANLGQNLNILLLGTDIVASSKAT
ATGFRPPTDSFEGRSDTIMLAHFNPEQKKVNVLSVPRDTRTDIPGFGAHKINVANVYGGPALAARAIGELTGAEINRYVR
INPQGVVQLIDVLGGVTVYIPKRMKYSDDSQHLYIDLPQGWHTLSGFQAQQYLRFRSDELGDIGRVQRQQALLRSLGERA
VRPENLLKIGAILETVQTNIDTNLTIEDIFDLAKFATQIDLKRDLQMVLMPGRFSRPGEYDISYWIPNHNKASQLGVRFF
GATAEAGAEADEPLEPRQVRLTVQNATGVPGMARQVGRVLQKQGFQVLDYAADRPDPIWRTEIIAQQGNAEAAQLVSDAL
KVGAVRVEATGSIYTDVTLRIGKDWLKRLEQQQSNKTAYQ
>Mature_439_residues
SKTTQPNPARTAWNSWILLGVAAVLTFLGVVGGMTLWLSKPFENDRYREANALFERANLGQNLNILLLGTDIVASSKATA
TGFRPPTDSFEGRSDTIMLAHFNPEQKKVNVLSVPRDTRTDIPGFGAHKINVANVYGGPALAARAIGELTGAEINRYVRI
NPQGVVQLIDVLGGVTVYIPKRMKYSDDSQHLYIDLPQGWHTLSGFQAQQYLRFRSDELGDIGRVQRQQALLRSLGERAV
RPENLLKIGAILETVQTNIDTNLTIEDIFDLAKFATQIDLKRDLQMVLMPGRFSRPGEYDISYWIPNHNKASQLGVRFFG
ATAEAGAEADEPLEPRQVRLTVQNATGVPGMARQVGRVLQKQGFQVLDYAADRPDPIWRTEIIAQQGNAEAAQLVSDALK
VGAVRVEATGSIYTDVTLRIGKDWLKRLEQQQSNKTAYQ

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 48755; Mature: 48624

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTTQPNPARTAWNSWILLGVAAVLTFLGVVGGMTLWLSKPFENDRYREANALFERANL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCC
GQNLNILLLGTDIVASSKATATGFRPPTDSFEGRSDTIMLAHFNPEQKKVNVLSVPRDTR
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCC
TDIPGFGAHKINVANVYGGPALAARAIGELTGAEINRYVRINPQGVVQLIDVLGGVTVYI
CCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEE
PKRMKYSDDSQHLYIDLPQGWHTLSGFQAQQYLRFRSDELGDIGRVQRQQALLRSLGERA
ECCCCCCCCCCEEEEECCCCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
VRPENLLKIGAILETVQTNIDTNLTIEDIFDLAKFATQIDLKRDLQMVLMPGRFSRPGEY
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCC
DISYWIPNHNKASQLGVRFFGATAEAGAEADEPLEPRQVRLTVQNATGVPGMARQVGRVL
CEEEEECCCCCHHHHCEEEECCCHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
QKQGFQVLDYAADRPDPIWRTEIIAQQGNAEAAQLVSDALKVGAVRVEATGSIYTDVTLR
HHCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCEEEEEECCCEEEEEEEE
IGKDWLKRLEQQQSNKTAYQ
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKTTQPNPARTAWNSWILLGVAAVLTFLGVVGGMTLWLSKPFENDRYREANALFERANL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCC
GQNLNILLLGTDIVASSKATATGFRPPTDSFEGRSDTIMLAHFNPEQKKVNVLSVPRDTR
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCC
TDIPGFGAHKINVANVYGGPALAARAIGELTGAEINRYVRINPQGVVQLIDVLGGVTVYI
CCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEE
PKRMKYSDDSQHLYIDLPQGWHTLSGFQAQQYLRFRSDELGDIGRVQRQQALLRSLGERA
ECCCCCCCCCCEEEEECCCCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
VRPENLLKIGAILETVQTNIDTNLTIEDIFDLAKFATQIDLKRDLQMVLMPGRFSRPGEY
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCC
DISYWIPNHNKASQLGVRFFGATAEAGAEADEPLEPRQVRLTVQNATGVPGMARQVGRVL
CEEEEECCCCCHHHHCEEEECCCHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
QKQGFQVLDYAADRPDPIWRTEIIAQQGNAEAAQLVSDALKVGAVRVEATGSIYTDVTLR
HHCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCEEEEEECCCEEEEEEEE
IGKDWLKRLEQQQSNKTAYQ
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]