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The map label for this gene is yomI [H]

Identifier: 37523040

GI number: 37523040

Start: 3680528

End: 3681121

Strand: Reverse

Name: yomI [H]

Synonym: gll3471

Alternate gene names: 37523040

Gene position: 3681121-3680528 (Counterclockwise)

Preceding gene: 37523045

Following gene: 37523039

Centisome position: 79.01

GC content: 68.52

Gene sequence:

>594_bases
ATGCCGTCGATGTGGTGCAGGCCAGTTCTGGTCGCCATTTTGCTTGCAAGTCTGGGCCTACCGGCCCCGGCCAGCGAAAA
TGCCCAACTGGCGCTGTGGCGGCAGGTCTCCTTTCCGCTTGAAAACTTCAGCGGCTTTTCTTCGCGCTTCGGCTGGCGCA
CCTCGCCCACCGGCGCCCGTCGCCGCGAATTTCACAGCGGCCTCGACATGCCCGCACCGGTGGGCACCTACATCCGGGCC
TGGGCCGACGGGCAGGTGCGCACGGTGCGCTACGACGGGCGTTGCGGCTGGCATGTCGTCGTCACCTCGGGCGATTGGAC
GAGTACGTATTGCCACATCAGCGCCGTGGGCGTCCAGGAAGGCCAGACGGTGCGCGCCGGGGAAGTGGTGGCGGCGGTGG
GCAGCACGGGACGCTCCACCGGACCGCACTTGCACTGGACCTTGCGCCACCGCGGCAAGCTTGTCGATCCCGAACTGGTG
CTGCAGGCGATGCAATTGGCCTGGCAGGGGGCGGCGGCTCCCGAGGTGGCTCCCGCCCAGGATGTCCCCGACGAAGCGCA
GCACAGTCCGCTGCCGGTGGGCGAGCAGCCGTAG

Upstream 100 bases:

>100_bases
CTTAGGCGGTGGAGATCCCTCACCGGGCCTCTCCCTTGCGGAGGATATATTGTTCTTGCATTTCCCCACTTTGGGGTAAG
CTTACGGCAGTTGTGGGGAG

Downstream 100 bases:

>100_bases
GCTATCATGCGGTAGCACTGCACCGCTGAAGGCTGATGGCGCGTTCGCAGGCCCCTGGGGCGTCTCCTTTTTGCCTCTTT
TACCACGAGAAGACCAAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MPSMWCRPVLVAILLASLGLPAPASENAQLALWRQVSFPLENFSGFSSRFGWRTSPTGARRREFHSGLDMPAPVGTYIRA
WADGQVRTVRYDGRCGWHVVVTSGDWTSTYCHISAVGVQEGQTVRAGEVVAAVGSTGRSTGPHLHWTLRHRGKLVDPELV
LQAMQLAWQGAAAPEVAPAQDVPDEAQHSPLPVGEQP

Sequences:

>Translated_197_residues
MPSMWCRPVLVAILLASLGLPAPASENAQLALWRQVSFPLENFSGFSSRFGWRTSPTGARRREFHSGLDMPAPVGTYIRA
WADGQVRTVRYDGRCGWHVVVTSGDWTSTYCHISAVGVQEGQTVRAGEVVAAVGSTGRSTGPHLHWTLRHRGKLVDPELV
LQAMQLAWQGAAAPEVAPAQDVPDEAQHSPLPVGEQP
>Mature_196_residues
PSMWCRPVLVAILLASLGLPAPASENAQLALWRQVSFPLENFSGFSSRFGWRTSPTGARRREFHSGLDMPAPVGTYIRAW
ADGQVRTVRYDGRCGWHVVVTSGDWTSTYCHISAVGVQEGQTVRAGEVVAAVGSTGRSTGPHLHWTLRHRGKLVDPELVL
QAMQLAWQGAAAPEVAPAQDVPDEAQHSPLPVGEQP

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=124, Percent_Identity=35.4838709677419, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 21356; Mature: 21225

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSMWCRPVLVAILLASLGLPAPASENAQLALWRQVSFPLENFSGFSSRFGWRTSPTGAR
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHCCCHHHCCCCCCCCCCHH
RREFHSGLDMPAPVGTYIRAWADGQVRTVRYDGRCGWHVVVTSGDWTSTYCHISAVGVQE
HHHHHCCCCCCCCCCHHHEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEEECCC
GQTVRAGEVVAAVGSTGRSTGPHLHWTLRHRGKLVDPELVLQAMQLAWQGAAAPEVAPAQ
CCEEECCCEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
DVPDEAQHSPLPVGEQP
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PSMWCRPVLVAILLASLGLPAPASENAQLALWRQVSFPLENFSGFSSRFGWRTSPTGAR
CCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHCCCHHHCCCCCCCCCCHH
RREFHSGLDMPAPVGTYIRAWADGQVRTVRYDGRCGWHVVVTSGDWTSTYCHISAVGVQE
HHHHHCCCCCCCCCCHHHEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEEECCC
GQTVRAGEVVAAVGSTGRSTGPHLHWTLRHRGKLVDPELVLQAMQLAWQGAAAPEVAPAQ
CCEEECCCEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
DVPDEAQHSPLPVGEQP
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]