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The map label for this gene is cpcA [H]

Identifier: 37522787

GI number: 37522787

Start: 3425312

End: 3425800

Strand: Direct

Name: cpcA [H]

Synonym: gvip444

Alternate gene names: 37522787

Gene position: 3425312-3425800 (Clockwise)

Preceding gene: 37522786

Following gene: 37522789

Centisome position: 73.52

GC content: 61.76

Gene sequence:

>489_bases
ATGAAGACCGTGATTACCGAAGTGATCGCCTCGGCGGACAGCCAGGGGCGTTTTTTGAACAACACCGAGCTGCAGGCGGC
GAACGGCCGTTTTCAGCGGGCGACGGCCTCGATGGAAGCGGCGCGGGCGCTGACCTCGAACGCCGATTCGCTGGTCAAGG
GTGCGGTGCAAGAGGTGTATAACAAGTTTCCGTACCTGACGCAGCCGGGTCAGATGGGATACGGCGACACCAACCAGGCG
AAGTGCGCCCGCGACATCAGCCACTACCTGCGCTTCATCACCTACAGCTTGGTGGCCGGTGGTACCGGTCCATTGGACGA
CTACATCGTGGCCGGTCTGCGGGAGGTGAACCGCACGTTCAACCTGTCGCCGAGCTGGTACATCGAGGCGTTGAAGCACA
TCAAGGGGAAGGTCGGTTCGCAGCTGTCGGGCCAGCCGCTCACCGAGGCGAACGCCTACATCGACTACTGCATCAACGCC
CTGAGCTAA

Upstream 100 bases:

>100_bases
GTTCGGCGCTGGTCAACGAAGCGGCCACCTACTTCGACAAGGCCGCCGCGAGCATCGCCTGAGTTTCACCCACCGAGACC
GACACAGGAGAACGACGAGC

Downstream 100 bases:

>100_bases
CTGCTCTCGGCTGAGATCTCTGGGGCAGGCGATGCATTGCGCCTGCCCTTTTTGATTGAAACCAATCGACAAAAATCGCC
GGGAAAGTCCGCCTTCCCGG

Product: phycocyanin alpha chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQA
KCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINA
LS

Sequences:

>Translated_162_residues
MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQA
KCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINA
LS
>Mature_162_residues
MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQA
KCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINA
LS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006246 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17663; Mature: 17663

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVY
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
NKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTF
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
NLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTVITEVIASADSQGRFLNNTELQAANGRFQRATASMEAARALTSNADSLVKGAVQEVY
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
NKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTF
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
NLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINALS
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840 [H]