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The map label for this gene is ydeS [H]

Identifier: 37522739

GI number: 37522739

Start: 3378819

End: 3379409

Strand: Direct

Name: ydeS [H]

Synonym: glr3170

Alternate gene names: 37522739

Gene position: 3378819-3379409 (Clockwise)

Preceding gene: 37522736

Following gene: 37522741

Centisome position: 72.52

GC content: 59.39

Gene sequence:

>591_bases
ATGCCTCAAGACCCTGAAAAACGAGTTGGGCGACCTCGGTCTGCAGAATCGAGGGCAGCAATCCTTAACGCAACCTGGAC
ATTGCTCAAAACAACCACCCTCAGAGATCTGTCGATCGAGGCGATTGCCCACGAGTCCGGTGTCGGGAAAGCCACGATCT
ACCGCTGGTGGCCCAGCAAAGCGGCGGTGGCCATCGATGCCTTTTTGGAGAATGTACTGCTTGTCACGCCTTACCCAGAG
GGACTGTCGGCCACAGAAGCCATCGCACGGCAAATGGCTTCCCTGGTGCAAGCCTGGTCGGGGGAGTACGGGCGTATCCT
GGCACAAGTGATCGCCGAGGGGCAGGCCGATCCAGAGGCACTGAACAACTACCGCGCTCGCTATCTCAATCACCGCCGTG
CCGAGGCGAAAGCCGTCATCCAGCGGGGCATCAAGGATGGCGAGTTCGCCCCCGATCTCGACCCGGACCTGGCGATCGAT
ATTCTTTATGGCCCCATCTACTATCGGCTTTTGGTCGGGCACTTACCTCTCGACCAGCGGTTTGCGACAGAGCTCTCTCA
ATGGGCCCTGCAGGCGCTCAGGGGCAATTGA

Upstream 100 bases:

>100_bases
TTCCATCCGTCCATTTTGGAGCCGCCTCGTCCCGTGTCATTGATTTATGATACGAATCGTATTAGAATAAAAACTAGATG
TCAAGCGCTGATTCTGAAAA

Downstream 100 bases:

>100_bases
CCACACACCCGACACCCGCTCGCTCTCAGTACCCGGCACGCTTGAGGAAGAATTCCGACTCAATGCGCGTGGCTCGGTGC
GGCTTCGGAGCGCTTTTCGC

Product: TetR family transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MPQDPEKRVGRPRSAESRAAILNATWTLLKTTTLRDLSIEAIAHESGVGKATIYRWWPSKAAVAIDAFLENVLLVTPYPE
GLSATEAIARQMASLVQAWSGEYGRILAQVIAEGQADPEALNNYRARYLNHRRAEAKAVIQRGIKDGEFAPDLDPDLAID
ILYGPIYYRLLVGHLPLDQRFATELSQWALQALRGN

Sequences:

>Translated_196_residues
MPQDPEKRVGRPRSAESRAAILNATWTLLKTTTLRDLSIEAIAHESGVGKATIYRWWPSKAAVAIDAFLENVLLVTPYPE
GLSATEAIARQMASLVQAWSGEYGRILAQVIAEGQADPEALNNYRARYLNHRRAEAKAVIQRGIKDGEFAPDLDPDLAID
ILYGPIYYRLLVGHLPLDQRFATELSQWALQALRGN
>Mature_195_residues
PQDPEKRVGRPRSAESRAAILNATWTLLKTTTLRDLSIEAIAHESGVGKATIYRWWPSKAAVAIDAFLENVLLVTPYPEG
LSATEAIARQMASLVQAWSGEYGRILAQVIAEGQADPEALNNYRARYLNHRRAEAKAVIQRGIKDGEFAPDLDPDLAIDI
LYGPIYYRLLVGHLPLDQRFATELSQWALQALRGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21779; Mature: 21648

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQDPEKRVGRPRSAESRAAILNATWTLLKTTTLRDLSIEAIAHESGVGKATIYRWWPSK
CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
AAVAIDAFLENVLLVTPYPEGLSATEAIARQMASLVQAWSGEYGRILAQVIAEGQADPEA
HHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHH
LNNYRARYLNHRRAEAKAVIQRGIKDGEFAPDLDPDLAIDILYGPIYYRLLVGHLPLDQR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
FATELSQWALQALRGN
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PQDPEKRVGRPRSAESRAAILNATWTLLKTTTLRDLSIEAIAHESGVGKATIYRWWPSK
CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
AAVAIDAFLENVLLVTPYPEGLSATEAIARQMASLVQAWSGEYGRILAQVIAEGQADPEA
HHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHH
LNNYRARYLNHRRAEAKAVIQRGIKDGEFAPDLDPDLAIDILYGPIYYRLLVGHLPLDQR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
FATELSQWALQALRGN
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]