Click here to switch to the map view.

The map label for this gene is petC

Identifier: 37522607

GI number: 37522607

Start: 3233059

End: 3233619

Strand: Direct

Name: petC

Synonym: gvip416

Alternate gene names: 37522607

Gene position: 3233059-3233619 (Clockwise)

Preceding gene: 37522602

Following gene: 37522608

Centisome position: 69.39

GC content: 61.32

Gene sequence:

>561_bases
ATGAGTGAATCCGCAGCCCAAGAAATTCCGATGAGTCGGCGCCAGTTGCTCTCCTTCGTCACCGGCGGAGCGATTGCAGC
GACGACGGCAGCCACTCTTTACCCTGTGGTCCTGTACTTCCTGCCGCCTTCCACGGCCGGCGGCGGTGAGGGGGTCGCCG
CCAAAGACAAAGAAGGCAAGGACATTTCTGTCTCCAAACTGCTGGCCGCAGCGACACCGGGCGAGCCGGTGCTCACCCTG
GGCCTCGATGTCAACGGCGGCGACGCCACCTACATCGTGATCAACGATCAAAAAGAGATCGCCAATTTCGGAATCAACGC
CGTGTGCACCCACCTGGGCTGCGTGGTGCCCTGGGACAACGGCGCCAAGCAATTCAAGTGCCCCTGCCACGGATCGGTCT
ACAATGCCGACGGTGGTCTGGAGCGCGGTCCGGCGCCTCAACCGTTGGCGTTGGTCAAAGCCACCGTCTCCGATGACAAG
GTGCTGATTGCACCCTGGACCGAGCAGGACTTCCGCTGCACCGACTTGTGGTGCAACAAGGATCCGTACTGGGTGAAGTA
A

Upstream 100 bases:

>100_bases
AGTGTTAATCTCTGTTAAGCAATCGTACGCATTGAGGGCGATCGGTCGTTAATATCTTTTCAAGACCTAATGTTGCCGCT
TAGCCCGATAAGGGAGAACC

Downstream 100 bases:

>100_bases
GCAACGCAGAGGGTATCGAAGCATGAAAAAGCAATGGATAGCCGGTGCCTTCGGCTTGACGGCGGCGCTGGCAGGACTGG
TGAGCGTGCCGCAGAGCGCC

Product: cytochrome b6-f complex iron-sulfur subunit

Products: NA

Alternate protein names: Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein; ISP; RISP; Rieske iron-sulfur protein

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MSESAAQEIPMSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTL
GLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDK
VLIAPWTEQDFRCTDLWCNKDPYWVK

Sequences:

>Translated_186_residues
MSESAAQEIPMSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTL
GLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDK
VLIAPWTEQDFRCTDLWCNKDPYWVK
>Mature_185_residues
SESAAQEIPMSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTLG
LDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKV
LIAPWTEQDFRCTDLWCNKDPYWVK

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

COG id: COG0723

COG function: function code C; Rieske Fe-S protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein. Note=The transmembrane helix obliquely spans the membrane in one monomer, and its extrinsic C-terminal domain is part of the other monomer (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UCRI_GLOVI (Q7NCE1)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_925984.1
- ProteinModelPortal:   Q7NCE1
- GeneID:   2601439
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.3038
- HOGENOM:   HBG668715
- OMA:   YPVANYF
- ProtClustDB:   PRK13474
- BioCyc:   GVIO251221:GLR3038-MONOMER
- BRENDA:   1.10.99.1
- HAMAP:   MF_01335
- InterPro:   IPR014909
- InterPro:   IPR017941
- InterPro:   IPR014349
- InterPro:   IPR005805
- InterPro:   IPR006311
- Gene3D:   G3DSA:2.102.10.10
- PANTHER:   PTHR10134
- PRINTS:   PR00162
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF08802 CytB6-F_Fe-S; PF00355 Rieske; SSF50022 Rieske_dom

EC number: =1.10.99.1

Molecular weight: Translated: 19638; Mature: 19507

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS51296 RIESKE; PS51318 TAT; PS00199 RIESKE_1 ; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x160edb8c)-;

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESAAQEIPMSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGK
CCCCHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCC
DISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDN
CCCHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCHHHHHCCHHHHHHHCCEEEECCC
GAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKVLIAPWTEQDFRCTDLWCNK
CCCEEECCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEEEEECC
DPYWVK
CCCCCH
>Mature Secondary Structure 
SESAAQEIPMSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGK
CCCHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCC
DISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDN
CCCHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCHHHHHCCHHHHHHHCCEEEECCC
GAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKVLIAPWTEQDFRCTDLWCNK
CCCEEECCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEEEEECC
DPYWVK
CCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292