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The map label for this gene is psbU

Identifier: 37522442

GI number: 37522442

Start: 3067122

End: 3067598

Strand: Reverse

Name: psbU

Synonym: gvip391

Alternate gene names: 37522442

Gene position: 3067598-3067122 (Counterclockwise)

Preceding gene: 37522443

Following gene: 37522441

Centisome position: 65.84

GC content: 61.22

Gene sequence:

>477_bases
ATGCAGGAACATATCCGCAAGATCAGCGCTCTGGTGTTGAGCGGAGCAGTCTGCATGGGGATGGGTACTGCGGTTTTGGC
CCAGAGCAGCCCCAGTCCGTCGGGCACTTATCAACCGGGTGATAAAACCAATCAGGTACCGCCCACAACGACCACACCCG
AGCCCGGCCCCGCCGGCACCCCGCCAAGCCCGAGCAGCCCCTACGGTGCCCCGGCTCAGCCGTCGACCACGCCGCCGTCT
TCCACCAGCCCGTCGACTACCCCGGCCCCGACAGCCCGGACGATCGACCTCAACGCCGTAACTTCTGCACAACTGGTTCG
TGCCGGTCTCGACGAACCTTCCGCCAAACTCATTGAACAGAACCAACCCTACACCAAGCCGGAGGATGTTCTTCAGGTGC
AGGGTCTTTCCGAACAGACCAAGGCGGCGCTCAAAGCGAACATGGATATCCTCAGAGCCAATCCCAAAATGAAGTAG

Upstream 100 bases:

>100_bases
ACGATATGCAAAGAGTGATTTCCTCCATATCAAGGAGGACGAAGCGTCTGTTAGCCGGTGACACTGTCTTTAGCATTTAG
ATTATGAAGAGGATTCCAAA

Downstream 100 bases:

>100_bases
GCCAAGATTTCGACTGAAGATACAACTCGGATAGCAGCATTACCGGCCTGGGAGCTTTCGTGAACTTCGCCTTTCTCCCA
GGCCGTTTCCTGCTTTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: PS II complex 12 kDa extrinsic protein; PSII-U

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQEHIRKISALVLSGAVCMGMGTAVLAQSSPSPSGTYQPGDKTNQVPPTTTTPEPGPAGTPPSPSSPYGAPAQPSTTPPS
STSPSTTPAPTARTIDLNAVTSAQLVRAGLDEPSAKLIEQNQPYTKPEDVLQVQGLSEQTKAALKANMDILRANPKMK

Sequences:

>Translated_158_residues
MQEHIRKISALVLSGAVCMGMGTAVLAQSSPSPSGTYQPGDKTNQVPPTTTTPEPGPAGTPPSPSSPYGAPAQPSTTPPS
STSPSTTPAPTARTIDLNAVTSAQLVRAGLDEPSAKLIEQNQPYTKPEDVLQVQGLSEQTKAALKANMDILRANPKMK
>Mature_158_residues
MQEHIRKISALVLSGAVCMGMGTAVLAQSSPSPSGTYQPGDKTNQVPPTTTTPEPGPAGTPPSPSSPYGAPAQPSTTPPS
STSPSTTPAPTARTIDLNAVTSAQLVRAGLDEPSAKLIEQNQPYTKPEDVLQVQGLSEQTKAALKANMDILRANPKMK

Specific function: Stabilizes the structure of photosystem II oxygen- evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation (Potential)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Lumenal side (Potential). Note=Associated with photosystem II at the extracellular side of the inner membrane (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbU family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBU_GLOVI (Q7NCV3)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_925819.1
- ProteinModelPortal:   Q7NCV3
- SMR:   Q7NCV3
- GeneID:   2601274
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.2873
- BioCyc:   GVIO251221:GLL2873-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_00589

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16301; Mature: 16301

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEHIRKISALVLSGAVCMGMGTAVLAQSSPSPSGTYQPGDKTNQVPPTTTTPEPGPAGT
CHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPSPSSPYGAPAQPSTTPPSSTSPSTTPAPTARTIDLNAVTSAQLVRAGLDEPSAKLIEQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHC
NQPYTKPEDVLQVQGLSEQTKAALKANMDILRANPKMK
CCCCCCHHHHHHHCCCCHHHHHHHHHCCHHCCCCCCCC
>Mature Secondary Structure
MQEHIRKISALVLSGAVCMGMGTAVLAQSSPSPSGTYQPGDKTNQVPPTTTTPEPGPAGT
CHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPSPSSPYGAPAQPSTTPPSSTSPSTTPAPTARTIDLNAVTSAQLVRAGLDEPSAKLIEQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHC
NQPYTKPEDVLQVQGLSEQTKAALKANMDILRANPKMK
CCCCCCHHHHHHHCCCCHHHHHHHHHCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292