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The map label for this gene is desC

Identifier: 37522435

GI number: 37522435

Start: 3057506

End: 3058357

Strand: Reverse

Name: desC

Synonym: gvip390

Alternate gene names: NA

Gene position: 3058357-3057506 (Counterclockwise)

Preceding gene: 37522436

Following gene: 37522433

Centisome position: 65.64

GC content: 65.26

Gene sequence:

>852_bases
ATGACTGCGAATGTCGTTTCGGGCGCCGGGGGCGTTGCTGGTTGGCGCGCGCTCAACTGGCCCACCCTGGGCTTTTTGGT
CCTGATGCACGGGCTTGCTCTGCTGGCACCCTGGTTTTTCAACTGGCAGGCATTGGCGGTTGCCCTCGGGTTGCATTGGC
TCATCGGCAGCCTGGGCATCTGTCTGGGTTACCACCGGCTTTTGACCCACCGCAGCTTTCGGGTGCCGAGGGGGTTGGAG
TGTGTTTTTGCGATGCTGGGAGCCCTGGCGCTGCAGGGCGGCCCCATCTTCTGGGTGGCAGCCCACCGGCTGCACCATGC
CCACGCCGACGACGACGCCCGAGACCCCCACTCCTCCGGCCGGGGCTTCTGGTGGAGCCATGTGCTGTGGCTTCTCTACC
GGCACCCGGAACTTTCCGATGGCCAAACCCACCGCAAGTACGCCCCGGATTTGGCCCGTCAACCGTTCTACCGCTGGCTG
AACCGCTACCACCTGCTGCTGCAGATTCCTTTGGCGGTGCTGCTATTTGCGCTGGGGGGCTGGCCGTTTGTGGTCTATGG
AGTGTTCGTGCGTGCGGTCGTGCTCTGGCACACCACCTGGCTCATCAACTCCGCCGCCCACCTGGCAGGTTACCGCACCA
GCGAGGTGCCGGACAGTTCGCGCAACCTCTGGTGGGCGGCTCTGCTCACCTACGGCGAGGGCTGGCACAACAACCACCAT
GCCCAACCGAACGCCGCGCGGGCGGGCCTGCGGTGGTGGGAAGTGGACATGACCTGGTGGGTGATTCGAGCGCTGGAAAT
GGCCGGGTTGGCGACACAGGTGGTCCCACCCCGACCAAATCCGGTGCGGTGA

Upstream 100 bases:

>100_bases
CCGCGCTTCGATGCGTGGAGGGGCTGTCGGATTTCGCGAAATGCTCCTCTGGTCGCCAATGCGGGCTCCGGCATCGGTAC
TTATCGACAAGGAAATCCTG

Downstream 100 bases:

>100_bases
GCAGCGGCTCTCCGCTTTGCACAAAGCGGAACTATAAAAAATTCAGACCGATTGTAAGTACGCTTTCGGCCGGAGCGCTA
CAGCACTGTGTTTGACCCGC

Product: delta 9 acyl-lipid desaturase

Products: NA

Alternate protein names: Fatty Acid Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Acyl-CoA Desaturase; Fatty Acid Desaturase Subfamily; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Fatty Acid Desaturase Family Protein; Fatty Acid Desaturase Domain Protein; Fatty Acid Desaturase Family Proteiin; Stearoyl-CoA Desaturase; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Delta-9 Acyl-Lipid Desaturase; Delta 9 Acyl-Lipid Desaturase; Fatty Acid Desaturase Protein; Membrane-Bound Fatty Acid Desaturase; Long Chain Acyl-CoA Desaturase; Delta-9 Fatty Acid Desaturase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Fatty Acid-CoA Desaturase; Acyl-Coa Desaturase; Delta-9-Acyl-Lipid Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Eucaryotic Stearoyl-CoA 9-Desaturase

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTANVVSGAGGVAGWRALNWPTLGFLVLMHGLALLAPWFFNWQALAVALGLHWLIGSLGICLGYHRLLTHRSFRVPRGLE
CVFAMLGALALQGGPIFWVAAHRLHHAHADDDARDPHSSGRGFWWSHVLWLLYRHPELSDGQTHRKYAPDLARQPFYRWL
NRYHLLLQIPLAVLLFALGGWPFVVYGVFVRAVVLWHTTWLINSAAHLAGYRTSEVPDSSRNLWWAALLTYGEGWHNNHH
AQPNAARAGLRWWEVDMTWWVIRALEMAGLATQVVPPRPNPVR

Sequences:

>Translated_283_residues
MTANVVSGAGGVAGWRALNWPTLGFLVLMHGLALLAPWFFNWQALAVALGLHWLIGSLGICLGYHRLLTHRSFRVPRGLE
CVFAMLGALALQGGPIFWVAAHRLHHAHADDDARDPHSSGRGFWWSHVLWLLYRHPELSDGQTHRKYAPDLARQPFYRWL
NRYHLLLQIPLAVLLFALGGWPFVVYGVFVRAVVLWHTTWLINSAAHLAGYRTSEVPDSSRNLWWAALLTYGEGWHNNHH
AQPNAARAGLRWWEVDMTWWVIRALEMAGLATQVVPPRPNPVR
>Mature_282_residues
TANVVSGAGGVAGWRALNWPTLGFLVLMHGLALLAPWFFNWQALAVALGLHWLIGSLGICLGYHRLLTHRSFRVPRGLEC
VFAMLGALALQGGPIFWVAAHRLHHAHADDDARDPHSSGRGFWWSHVLWLLYRHPELSDGQTHRKYAPDLARQPFYRWLN
RYHLLLQIPLAVLLFALGGWPFVVYGVFVRAVVLWHTTWLINSAAHLAGYRTSEVPDSSRNLWWAALLTYGEGWHNNHHA
QPNAARAGLRWWEVDMTWWVIRALEMAGLATQVVPPRPNPVR

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI53759151, Length=230, Percent_Identity=33.4782608695652, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI148596961, Length=229, Percent_Identity=30.5676855895196, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI148596938, Length=106, Percent_Identity=34.9056603773585, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17561776, Length=219, Percent_Identity=31.5068493150685, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17540878, Length=219, Percent_Identity=31.0502283105023, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17561774, Length=245, Percent_Identity=30.2040816326531, Blast_Score=100, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6321383, Length=284, Percent_Identity=29.9295774647887, Blast_Score=125, Evalue=9e-30,
Organism=Drosophila melanogaster, GI24646500, Length=284, Percent_Identity=28.5211267605634, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24646303, Length=259, Percent_Identity=31.6602316602317, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24646299, Length=259, Percent_Identity=31.6602316602317, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24646305, Length=259, Percent_Identity=31.6602316602317, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24646301, Length=259, Percent_Identity=31.6602316602317, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24646297, Length=259, Percent_Identity=31.6602316602317, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24646295, Length=245, Percent_Identity=33.0612244897959, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24662393, Length=269, Percent_Identity=28.996282527881, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI21358571, Length=271, Percent_Identity=30.2583025830258, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21358573, Length=240, Percent_Identity=28.75, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32118; Mature: 31986

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TANVVSGAGGVAGWRALNWPTLGFLVLMHGLALLAPWFFNWQALAVALGLHWLIGSLGI
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLGYHRLLTHRSFRVPRGLECVFAMLGALALQGGPIFWVAAHRLHHAHADDDARDPHSSG
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCCCCCC
RGFWWSHVLWLLYRHPELSDGQTHRKYAPDLARQPFYRWLNRYHLLLQIPLAVLLFALGG
CCHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WPFVVYGVFVRAVVLWHTTWLINSAAHLAGYRTSEVPDSSRNLWWAALLTYGEGWHNNHH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
AQPNAARAGLRWWEVDMTWWVIRALEMAGLATQVVPPRPNPVR
CCCCHHHHCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA