Click here to switch to the map view.

The map label for this gene is sigK [H]

Identifier: 37522277

GI number: 37522277

Start: 2868381

End: 2868950

Strand: Reverse

Name: sigK [H]

Synonym: gll2708

Alternate gene names: 37522277

Gene position: 2868950-2868381 (Counterclockwise)

Preceding gene: 37522287

Following gene: 37522276

Centisome position: 61.58

GC content: 66.49

Gene sequence:

>570_bases
ATGACAGACCCGAACCGCACCGACGAAGCCGCGCTGGTGGCCAGAATCGCCCGCCAGGATCAATCGGCGCTCTCCGAGCT
TTACGATCGCTACGTCCGCATGCTGGCGGCGGTGGCGTTCAAGATCTTGGGCTCGCTCGAGGAGGCGGAGGAAGTGGTTC
TCGATGTCTTCTGCCAGGTGTGGCGCACGGCCGCAAGCTACGACGCCCGCCGCAGCCGCGTCGATGCCTGGCTTTTTATG
CTCACCCGCAGCCGGTCGCTCGACCGCCTGCGCGCTCTGCAGCGCAGCGCCCGTGCCCGGAACGCTTCGGTGCAAGAAGC
GCACGTGCAGTGGCCGATTCGGGAAGCCGACACCGCCGAGCAACTCGATCTGATCGAATGGCGGGGCCGGGTGAGCGCCG
CGCTCGAACGATTGCCGGACGAGCAGCGGCGGGTGCTGGAACTGGCGTACTACCAGGGGCTCACCCACACGCAGATCGCC
GCCCAAACGGGTAAACCGCTGGGTACCGTCAAAACCCGCATCCGCCTGGGGCTCAACAAGTTGCGCGACGCTCTGGGAAA
TGGGGGCTAG

Upstream 100 bases:

>100_bases
TTGCATCAAGTGTAGTCTCCGCAGATGTTTAACTAAGGATGGCAACCTGTGTGGCTGGAGACGTCAATACCCGATAGTAC
CGACGATCCCGGCAATTCCG

Downstream 100 bases:

>100_bases
GGCTCTGGAAAACCGCAAAATTAGTACAATGATGGCAACCCAGGCGAAACGCCATGAGCCCCGATCCCTGTTTTTGCGAA
CTTGCCCCCCTCCACGCCCT

Product: RNA polymerase ECF-type (group 3) sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MTDPNRTDEAALVARIARQDQSALSELYDRYVRMLAAVAFKILGSLEEAEEVVLDVFCQVWRTAASYDARRSRVDAWLFM
LTRSRSLDRLRALQRSARARNASVQEAHVQWPIREADTAEQLDLIEWRGRVSAALERLPDEQRRVLELAYYQGLTHTQIA
AQTGKPLGTVKTRIRLGLNKLRDALGNGG

Sequences:

>Translated_189_residues
MTDPNRTDEAALVARIARQDQSALSELYDRYVRMLAAVAFKILGSLEEAEEVVLDVFCQVWRTAASYDARRSRVDAWLFM
LTRSRSLDRLRALQRSARARNASVQEAHVQWPIREADTAEQLDLIEWRGRVSAALERLPDEQRRVLELAYYQGLTHTQIA
AQTGKPLGTVKTRIRLGLNKLRDALGNGG
>Mature_188_residues
TDPNRTDEAALVARIARQDQSALSELYDRYVRMLAAVAFKILGSLEEAEEVVLDVFCQVWRTAASYDARRSRVDAWLFML
TRSRSLDRLRALQRSARARNASVQEAHVQWPIREADTAEQLDLIEWRGRVSAALERLPDEQRRVLELAYYQGLTHTQIAA
QTGKPLGTVKTRIRLGLNKLRDALGNGG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21450; Mature: 21318

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPNRTDEAALVARIARQDQSALSELYDRYVRMLAAVAFKILGSLEEAEEVVLDVFCQV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRTAASYDARRSRVDAWLFMLTRSRSLDRLRALQRSARARNASVQEAHVQWPIREADTAE
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHH
QLDLIEWRGRVSAALERLPDEQRRVLELAYYQGLTHTQIAAQTGKPLGTVKTRIRLGLNK
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH
LRDALGNGG
HHHHHCCCC
>Mature Secondary Structure 
TDPNRTDEAALVARIARQDQSALSELYDRYVRMLAAVAFKILGSLEEAEEVVLDVFCQV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRTAASYDARRSRVDAWLFMLTRSRSLDRLRALQRSARARNASVQEAHVQWPIREADTAE
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHH
QLDLIEWRGRVSAALERLPDEQRRVLELAYYQGLTHTQIAAQTGKPLGTVKTRIRLGLNK
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH
LRDALGNGG
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA