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The map label for this gene is rbpE [H]

Identifier: 37522099

GI number: 37522099

Start: 2685089

End: 2685460

Strand: Reverse

Name: rbpE [H]

Synonym: gll2530

Alternate gene names: 37522099

Gene position: 2685460-2685089 (Counterclockwise)

Preceding gene: 37522100

Following gene: 37522098

Centisome position: 57.64

GC content: 65.32

Gene sequence:

>372_bases
ATGACAGTTTTTGTGGGCAACCTGCCCTTCTCGGTCACTGAGCAGGATATCACCGAGGCATTTAGCGAATACGGCACCGT
CAAGTCGGTGAAGATTCCTACCGACCGTGAGACTGGTAGACCCCGCGGCTTCGCCTTCGTCGAAATGGCCGACGAAGAAG
AAGCGAAAGTGATCGAATCGCTCGACGGCGCCACCTGGGACAACCGTCAAATCCGCGTCAACAAGGCCGAACCTCGCCCC
GAGCGCAGTGGCGGCGGCGGCGGCGGTGGCGGCTATCGTGGCGGCGGTGCCGGCGGTGGCGGTGGCGGTGGCGGTGGCGG
CTATCGTGGCGGCGGTGCCGGCGGTGGCGGCGGTCAGCGGCCTCGCTATTGA

Upstream 100 bases:

>100_bases
TTCCGACCCTGGCCTACACCGGCTACAGTGGGGAAGTTCGACCGTCGATCAGGGTGCATCGTTCTCCTTGGCGATTGGTA
AATTTTCCAGGAGACATGCA

Downstream 100 bases:

>100_bases
TTACTGGTTCGCCGGGTTCATCGGCTGCGCTGCACCCGGCCCGCTCGCCGGGTTCATCCATTACGTGGGAGAGAGTATTG
CGATGGCGCAAGTGAGAGTC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MTVFVGNLPFSVTEQDITEAFSEYGTVKSVKIPTDRETGRPRGFAFVEMADEEEAKVIESLDGATWDNRQIRVNKAEPRP
ERSGGGGGGGGYRGGGAGGGGGGGGGGYRGGGAGGGGGQRPRY

Sequences:

>Translated_123_residues
MTVFVGNLPFSVTEQDITEAFSEYGTVKSVKIPTDRETGRPRGFAFVEMADEEEAKVIESLDGATWDNRQIRVNKAEPRP
ERSGGGGGGGGYRGGGAGGGGGGGGGGYRGGGAGGGGGQRPRY
>Mature_122_residues
TVFVGNLPFSVTEQDITEAFSEYGTVKSVKIPTDRETGRPRGFAFVEMADEEEAKVIESLDGATWDNRQIRVNKAEPRPE
RSGGGGGGGGYRGGGAGGGGGGGGGGYRGGGAGGGGGQRPRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=97, Percent_Identity=41.2371134020619, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=42.1052631578947, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=42.1052631578947, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI5803137, Length=75, Percent_Identity=41.3333333333333, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=47.5, Blast_Score=79, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=48.0519480519481, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=48.0519480519481, Blast_Score=75, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=43.421052631579, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=83, Percent_Identity=40.9638554216867, Blast_Score=71, Evalue=5e-14,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=44.7368421052632, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 12515; Mature: 12384

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVFVGNLPFSVTEQDITEAFSEYGTVKSVKIPTDRETGRPRGFAFVEMADEEEAKVIES
CEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHH
LDGATWDNRQIRVNKAEPRPERSGGGGGGGGYRGGGAGGGGGGGGGGYRGGGAGGGGGQR
HCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PRY
CCC
>Mature Secondary Structure 
TVFVGNLPFSVTEQDITEAFSEYGTVKSVKIPTDRETGRPRGFAFVEMADEEEAKVIES
EEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHH
LDGATWDNRQIRVNKAEPRPERSGGGGGGGGYRGGGAGGGGGGGGGGYRGGGAGGGGGQR
HCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PRY
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]