| Definition | Gloeobacter violaceus PCC 7421 chromosome, complete genome. |
|---|---|
| Accession | NC_005125 |
| Length | 4,659,019 |
Click here to switch to the map view.
The map label for this gene is clpC [H]
Identifier: 37521633
GI number: 37521633
Start: 2215509
End: 2217968
Strand: Direct
Name: clpC [H]
Synonym: glr2064
Alternate gene names: 37521633
Gene position: 2215509-2217968 (Clockwise)
Preceding gene: 37521632
Following gene: 37521634
Centisome position: 47.55
GC content: 62.64
Gene sequence:
>2460_bases ATGTTTGAAAGATTTACCGAGAAAGCAATCAAAGTGATCATGTTGGCCCAGGAGGAAGCCCGTCGCCTGGGACACAACTT TGTGGGTACCGAGCAAATCCTGCTCGGCCTCATCGGTGAGGGCACCGGCGTCGCCGCCAAGGTGCTCAAGTCCATGGGAG TCAACCTGAAGGACGCCCGCATCGAGGTCGAAAAAATCATCGGCCGCGGCTCCGGGTTTGTGGCGGTCGAAATTCCGTTT ACGCCCCGGGCCAAGCGGGTGCTGGAGCTGTCGCTCGAAGAAGCACGCCAACTTGGCCACAACTACATCGGCACCGAGCA TTTGCTGCTGGGCCTCATCCGCGAGGGAGAAGGCGTCGCTGCCCGGGTGCTCGAGAATCTGGGAGTCGATCTGTCCAAGG TCCGCACCCAGGTCATCCGCATGCTGGGAGAGACCGCCGAGGTCTCCGCCGGGGGCAACACCGGCCGCACCAAGACCCCG ACCCTGGACGAGTTCGGCTCCAATCTCACCCAGATGGCCGCCGAGGGCAAACTCGACCCAGTGGTGGGCCGCGAAAAAGA AATCGAACGGGTCATCCAGATCCTGGGTCGCCGCACCAAAAATAACCCCGTGCTCATCGGCGAACCGGGCGTGGGCAAGA CGGCGATTGCCGAGGGCCTCGCCCAGCGCATCTCCAACAACGACATTCCCGACATCCTGGCCGACAAGCGCGTCGTCACC CTCGACATTGGCTTGTTGGTAGCGGGCACCAAGTACCGCGGTGAATTCGAAGAGCGGCTCAAAAAGATCATGGACGAGAT CCGTGCCGCCGGTAACGTCGTGCTGGTCATCGACGAGGTGCACACGCTCATCGGCGCCGGGGCTGCCGAGGGGGCCATCG ACGCCGCCAACATCCTCAAGCCGGCCCTCGCGCGCGGCGAGCTGCAGTGCATCGGGGCGACCACCCTCGATGAGTACCGC AAGCACATCGAGCGCGACGCCGCCCTCGAGCGCCGCTTCCAGCCGGTGATGGTGGGTGAGCCGACGGTCGATGAGACTAT CGAGATCCTGCGCGGGTTGCGCGAGCGCTACGAGCAGCACCACAAGCTCAAGATCACCGATGAGGCGCTCATCGCCGCCG CCCAGCTTTCCGATCGCTACATCTCCGATCGCTACTTGCCGGACAAGGCCATCGACCTGGTCGACGAGGCCGGTTCGCGC GTGCGGTTGCTCTCCTCGCAACTGCCCCCGGCGGCCAAGGAACTCGACAAAGAACTGCGCCAGATTCTCAAAGAAAAGGA CGACGCCGTGCGCGGCCAGGACTACGAGCGGGCGGGCGAGTTGCGCGACCGCGAGATGGAAATCAAATCCCAGATTCGCT CGATTGCCCAGGCGCGCAAGTCCGAGACCGCCAACGAAGAGTCTCCCAACGTCACCGAAGAGGATATCGCCTACATCGTC TCGAGTTGGACGGGGGTGCCGGTCAGCAAGCTCACCGAGTCTGAGACCGAGAAGCTCCTGCACATGGAAGACGTGCTCCA CCAGCGCCTCATCGGTCAAGAAGAAGCAGTCAAGGCCATCTCCCGGGCCATCCGCCGGGCGCGCGTCGGCCTCAAAAATC CGAAGCGGCCGATCGCGAGCTTCATCTTCAGCGGTCCCACCGGCGTCGGCAAGACCGAACTGGCCAAGTCGCTGGCGACC TACTTCTTCGGCTCCGAGGATGCGATGATCCGCCTCGACATGTCCGAGTACATGGAGCGGCACACGGTGAGCAAGCTCAT CGGTTCGCCCCCCGGCTACGTGGGCTACAACGAGGGCGGTCAGCTCACTGAGGCGGTGCGCCGCCGTCCCTACACGGTGA TCCTCTTCGACGAAATCGAGAAGGCCCACCCGGACGTGTTCAACGTGCTGCTGCAGATCCTCGAGGACGGTCGCCTCACC GATGCCAAGGGCCGCACGGTCGACTTCAAGAACACCTTGATGATCATGACCAGCAACGTCGGCTCCAAGGTGATCGAAAA GGGCGGCGGCGGCCTCGGCTTCAACACCGCCGGCACCGAAGAGGAGCAGCGCTACAACCGCATCAGCGAACTGGTCAAAG AAGAACTCAAGCAGTACTTCCGCCCCGAGTTCCTCAATCGCCTCGACGAGATCATTGTCTTCCACCCGCTGACGCGCGAG GAAGTCAAGCAGATCGCCGTGATCATGCTGCGCGAGGTGTTCGCCCGCCTCGAAGAGCAGAACATGAAGATCGAGATTAC CGACGCGTTCAACCGAAAGCTGATTGAAGAAGGCTACTCCGCCACCTACGGCGCCCGGCCGCTGCGCCGCGCCATCCAGC GCATGCTCGAAGACCAGCTGGCCGAAGAAATTCTGGCCGCCCGCCTTAAAGAGGGCGACACGGTCTTGGTCGACGTCGAT AGTGACGGCAAGCCGACCTTCATCGTCAAGGACCGCACCTTGGCCACCGCCGAAGGTTAA
Upstream 100 bases:
>100_bases TCAGAGCGCGGCCAGGAGCGGCTCATGCCCGGATCCCGGCTGCAGCCTGTGTTAGGATTAGGTAACCCTCAAAGGGCGCT GCAGGTGAAGGGACATAGCC
Downstream 100 bases:
>100_bases GGCCCATTACCCCACAGCCCCCGACCGATCGGTCGGGGGCTTTATTTTATCGCTCCATGCAAAAACCCCCAGCCAACGGA CCGGGGGCGATTCGCTCAAA
Product: endopeptidase Clp ATP-binding chain
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 819; Mature: 819
Protein sequence:
>819_residues MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSAGGNTGRTKTP TLDEFGSNLTQMAAEGKLDPVVGREKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRISNNDIPDILADKRVVT LDIGLLVAGTKYRGEFEERLKKIMDEIRAAGNVVLVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR KHIERDAALERRFQPVMVGEPTVDETIEILRGLRERYEQHHKLKITDEALIAAAQLSDRYISDRYLPDKAIDLVDEAGSR VRLLSSQLPPAAKELDKELRQILKEKDDAVRGQDYERAGELRDREMEIKSQIRSIAQARKSETANEESPNVTEEDIAYIV SSWTGVPVSKLTESETEKLLHMEDVLHQRLIGQEEAVKAISRAIRRARVGLKNPKRPIASFIFSGPTGVGKTELAKSLAT YFFGSEDAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVILFDEIEKAHPDVFNVLLQILEDGRLT DAKGRTVDFKNTLMIMTSNVGSKVIEKGGGGLGFNTAGTEEEQRYNRISELVKEELKQYFRPEFLNRLDEIIVFHPLTRE EVKQIAVIMLREVFARLEEQNMKIEITDAFNRKLIEEGYSATYGARPLRRAIQRMLEDQLAEEILAARLKEGDTVLVDVD SDGKPTFIVKDRTLATAEG
Sequences:
>Translated_819_residues MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSAGGNTGRTKTP TLDEFGSNLTQMAAEGKLDPVVGREKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRISNNDIPDILADKRVVT LDIGLLVAGTKYRGEFEERLKKIMDEIRAAGNVVLVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR KHIERDAALERRFQPVMVGEPTVDETIEILRGLRERYEQHHKLKITDEALIAAAQLSDRYISDRYLPDKAIDLVDEAGSR VRLLSSQLPPAAKELDKELRQILKEKDDAVRGQDYERAGELRDREMEIKSQIRSIAQARKSETANEESPNVTEEDIAYIV SSWTGVPVSKLTESETEKLLHMEDVLHQRLIGQEEAVKAISRAIRRARVGLKNPKRPIASFIFSGPTGVGKTELAKSLAT YFFGSEDAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVILFDEIEKAHPDVFNVLLQILEDGRLT DAKGRTVDFKNTLMIMTSNVGSKVIEKGGGGLGFNTAGTEEEQRYNRISELVKEELKQYFRPEFLNRLDEIIVFHPLTRE EVKQIAVIMLREVFARLEEQNMKIEITDAFNRKLIEEGYSATYGARPLRRAIQRMLEDQLAEEILAARLKEGDTVLVDVD SDGKPTFIVKDRTLATAEG >Mature_819_residues MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSAGGNTGRTKTP TLDEFGSNLTQMAAEGKLDPVVGREKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRISNNDIPDILADKRVVT LDIGLLVAGTKYRGEFEERLKKIMDEIRAAGNVVLVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR KHIERDAALERRFQPVMVGEPTVDETIEILRGLRERYEQHHKLKITDEALIAAAQLSDRYISDRYLPDKAIDLVDEAGSR VRLLSSQLPPAAKELDKELRQILKEKDDAVRGQDYERAGELRDREMEIKSQIRSIAQARKSETANEESPNVTEEDIAYIV SSWTGVPVSKLTESETEKLLHMEDVLHQRLIGQEEAVKAISRAIRRARVGLKNPKRPIASFIFSGPTGVGKTELAKSLAT YFFGSEDAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVILFDEIEKAHPDVFNVLLQILEDGRLT DAKGRTVDFKNTLMIMTSNVGSKVIEKGGGGLGFNTAGTEEEQRYNRISELVKEELKQYFRPEFLNRLDEIIVFHPLTRE EVKQIAVIMLREVFARLEEQNMKIEITDAFNRKLIEEGYSATYGARPLRRAIQRMLEDQLAEEILAARLKEGDTVLVDVD SDGKPTFIVKDRTLATAEG
Specific function: Competence gene repressor; required for cell growth at high temperature. Negative regulator of comK expression. May interact with MecA to negatively regulate comK [H]
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 UVR domain [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=327, Percent_Identity=38.5321100917431, Blast_Score=212, Evalue=9e-55, Organism=Escherichia coli, GI1788943, Length=869, Percent_Identity=46.9505178365938, Blast_Score=751, Evalue=0.0, Organism=Escherichia coli, GI1787109, Length=805, Percent_Identity=37.639751552795, Blast_Score=533, Evalue=1e-152, Organism=Saccharomyces cerevisiae, GI6320464, Length=705, Percent_Identity=47.3758865248227, Blast_Score=632, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6323002, Length=874, Percent_Identity=38.558352402746, Blast_Score=550, Evalue=1e-157,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 - InterPro: IPR001943 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small; PF02151 UVR [H]
EC number: NA
Molecular weight: Translated: 91139; Mature: 91139
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS50151 UVR ; PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHH IEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVA HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH ARVLENLGVDLSKVRTQVIRMLGETAEVSAGGNTGRTKTPTLDEFGSNLTQMAAEGKLDP HHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCC VVGREKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRISNNDIPDILADKRVVT CCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHCCEEEE LDIGLLVAGTKYRGEFEERLKKIMDEIRAAGNVVLVIDEVHTLIGAGAAEGAIDAANILK EEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCHHHHHHH PALARGELQCIGATTLDEYRKHIERDAALERRFQPVMVGEPTVDETIEILRGLRERYEQH HHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH HKLKITDEALIAAAQLSDRYISDRYLPDKAIDLVDEAGSRVRLLSSQLPPAAKELDKELR CCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEHHHHCCCHHHHHHHHHHH QILKEKDDAVRGQDYERAGELRDREMEIKSQIRSIAQARKSETANEESPNVTEEDIAYIV HHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH SSWTGVPVSKLTESETEKLLHMEDVLHQRLIGQEEAVKAISRAIRRARVGLKNPKRPIAS HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH FIFSGPTGVGKTELAKSLATYFFGSEDAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGG HHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCC QLTEAVRRRPYTVILFDEIEKAHPDVFNVLLQILEDGRLTDAKGRTVDFKNTLMIMTSNV HHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHCCCEECCCCCEEECCCEEEEEECCC GSKVIEKGGGGLGFNTAGTEEEQRYNRISELVKEELKQYFRPEFLNRLDEIIVFHPLTRE CHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCHH EVKQIAVIMLREVFARLEEQNMKIEITDAFNRKLIEEGYSATYGARPLRRAIQRMLEDQL HHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH AEEILAARLKEGDTVLVDVDSDGKPTFIVKDRTLATAEG HHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCC >Mature Secondary Structure MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHH IEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVA HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH ARVLENLGVDLSKVRTQVIRMLGETAEVSAGGNTGRTKTPTLDEFGSNLTQMAAEGKLDP HHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCC VVGREKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRISNNDIPDILADKRVVT CCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHCCEEEE LDIGLLVAGTKYRGEFEERLKKIMDEIRAAGNVVLVIDEVHTLIGAGAAEGAIDAANILK EEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCHHHHHHH PALARGELQCIGATTLDEYRKHIERDAALERRFQPVMVGEPTVDETIEILRGLRERYEQH HHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH HKLKITDEALIAAAQLSDRYISDRYLPDKAIDLVDEAGSRVRLLSSQLPPAAKELDKELR CCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEHHHHCCCHHHHHHHHHHH QILKEKDDAVRGQDYERAGELRDREMEIKSQIRSIAQARKSETANEESPNVTEEDIAYIV HHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH SSWTGVPVSKLTESETEKLLHMEDVLHQRLIGQEEAVKAISRAIRRARVGLKNPKRPIAS HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH FIFSGPTGVGKTELAKSLATYFFGSEDAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGG HHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCC QLTEAVRRRPYTVILFDEIEKAHPDVFNVLLQILEDGRLTDAKGRTVDFKNTLMIMTSNV HHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHCCCEECCCCCEEECCCEEEEEECCC GSKVIEKGGGGLGFNTAGTEEEQRYNRISELVKEELKQYFRPEFLNRLDEIIVFHPLTRE CHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCHH EVKQIAVIMLREVFARLEEQNMKIEITDAFNRKLIEEGYSATYGARPLRRAIQRMLEDQL HHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH AEEILAARLKEGDTVLVDVDSDGKPTFIVKDRTLATAEG HHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8016066; 7584024; 9384377; 8195092 [H]