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The map label for this gene is ycfQ [H]

Identifier: 37520989

GI number: 37520989

Start: 1525718

End: 1526326

Strand: Reverse

Name: ycfQ [H]

Synonym: gll1420

Alternate gene names: 37520989

Gene position: 1526326-1525718 (Counterclockwise)

Preceding gene: 37520995

Following gene: 37520985

Centisome position: 32.76

GC content: 55.83

Gene sequence:

>609_bases
ATGGAAACGAGAAAGTCTCAGGGTGTGCAGGGTCGTCCTCGCGCTTTTAATATCGACACAGCTTTAGATCAGGCTTTGCT
GCTGTTCTGGCGCAAGGGCTATTTGGGGACATCGCTCACCGATCTGACTGAGGCGATGGGTATTAACCGTCCCAGCCTTT
ACGCCGCCTTTGGCAACAAGGAGACTTTATTCCGCAAGGCACTCGACCGCTATCGCGATCAGCACAACTATCGGGATGCC
CTTGAGGAACCAACGGCTCGGAGAGTGATCGAGCGGATGATGCAGGGCGTTGTGGATTTAGTGACCAATCCAGGCAATCC
GTCTAGATGTCTGGTTACACAGAGTCTGCTCGCCTGTGCAGAGCCAGAGGATCCGCTTCATCAAGAATTGGCAGAACGCC
GAGCGGCAGGCGAGATTGCTATCCGCGCTCGCTTCGAGCGGGCGTTATCTGAGGGGGACTTGCCGCCTGATGCTGACCCT
GCTGCCCTTGCCCGCTTTGTACTCACGGTCAACGCTGGACTGTCCGTGCAAGCAGCAGGTGGAGCCAGTCGCACGGAACT
CCTACAAGTTGTTCAGACGGCATTGCAAGCCTGCCCAATATTAGATTAG

Upstream 100 bases:

>100_bases
TCCTTTGGGTGTGTCACTGCCAAATCAGTATTTATTTACCGATTGGTACAGATTAGCGCAGGACTTCTCAAGCTGTCAAG
GAAGTTTTATACTGAACGGT

Downstream 100 bases:

>100_bases
GTAAATAACGCGATGTGCAACTAATCCTTGAAAGGAAAATCCCACAGACGATACTAGAAACCCACTTTCCGCCCTTTAAG
TGTCACACCAAACTATTAAG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
METRKSQGVQGRPRAFNIDTALDQALLLFWRKGYLGTSLTDLTEAMGINRPSLYAAFGNKETLFRKALDRYRDQHNYRDA
LEEPTARRVIERMMQGVVDLVTNPGNPSRCLVTQSLLACAEPEDPLHQELAERRAAGEIAIRARFERALSEGDLPPDADP
AALARFVLTVNAGLSVQAAGGASRTELLQVVQTALQACPILD

Sequences:

>Translated_202_residues
METRKSQGVQGRPRAFNIDTALDQALLLFWRKGYLGTSLTDLTEAMGINRPSLYAAFGNKETLFRKALDRYRDQHNYRDA
LEEPTARRVIERMMQGVVDLVTNPGNPSRCLVTQSLLACAEPEDPLHQELAERRAAGEIAIRARFERALSEGDLPPDADP
AALARFVLTVNAGLSVQAAGGASRTELLQVVQTALQACPILD
>Mature_202_residues
METRKSQGVQGRPRAFNIDTALDQALLLFWRKGYLGTSLTDLTEAMGINRPSLYAAFGNKETLFRKALDRYRDQHNYRDA
LEEPTARRVIERMMQGVVDLVTNPGNPSRCLVTQSLLACAEPEDPLHQELAERRAAGEIAIRARFERALSEGDLPPDADP
AALARFVLTVNAGLSVQAAGGASRTELLQVVQTALQACPILD

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=208, Percent_Identity=34.1346153846154, Blast_Score=123, Evalue=9e-30,
Organism=Escherichia coli, GI87082397, Length=204, Percent_Identity=30.3921568627451, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22233; Mature: 22233

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METRKSQGVQGRPRAFNIDTALDQALLLFWRKGYLGTSLTDLTEAMGINRPSLYAAFGNK
CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEECCCH
ETLFRKALDRYRDQHNYRDALEEPTARRVIERMMQGVVDLVTNPGNPSRCLVTQSLLACA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
EPEDPLHQELAERRAAGEIAIRARFERALSEGDLPPDADPAALARFVLTVNAGLSVQAAG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECC
GASRTELLQVVQTALQACPILD
CCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
METRKSQGVQGRPRAFNIDTALDQALLLFWRKGYLGTSLTDLTEAMGINRPSLYAAFGNK
CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEECCCH
ETLFRKALDRYRDQHNYRDALEEPTARRVIERMMQGVVDLVTNPGNPSRCLVTQSLLACA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
EPEDPLHQELAERRAAGEIAIRARFERALSEGDLPPDADPAALARFVLTVNAGLSVQAAG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECC
GASRTELLQVVQTALQACPILD
CCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]