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The map label for this gene is thf1

Identifier: 37520969

GI number: 37520969

Start: 1501150

End: 1501836

Strand: Direct

Name: thf1

Synonym: glr1400

Alternate gene names: 37520969

Gene position: 1501150-1501836 (Clockwise)

Preceding gene: 37520968

Following gene: 37520970

Centisome position: 32.22

GC content: 63.03

Gene sequence:

>687_bases
GTGACCAGCAAACGCACTGTGTCCGATAGCAAGCGGGCCTTTTTCGCCGCCTACCCGCGGCCCGTCAACTCGATCTACCG
CCGGGTAATCGACGAGTTGCTGGTGGAAGTGCACTTGCTCATCACCAACCAGGACTTTCGCCACGACCCGCTGTTTGCCA
CGGGTCTACTGACCGCTTACCAGGCTTTGATGGAGGGCTACACGCCCGTCGAACAGCGCGATGCCATCTTGCGCGCCTTG
TGCACGGCCCTCGAATTGTCCTACGAGCAGTTGCATACGGACGCCGCCCAGTGGCGGGCGATTGCCGCCGAGCTGCCTGC
GCAGGAGGTGCTCGAGGTGATGGCGGGCAAGCGCGAAGCGGGCGACGGCCGGCTCAAGGCCATGGGCGACACCCTGGCCG
GGATCGCCAATGCCGAACGCTTCAAGTACAGCCGGTTGTTCTCGTTGGGGCTCGCCAATATTCTGGAGCAGGCGGGCCGC
GCGGCGGCGATGTCCGAAAAAGATCGCCTCGAGCGGCTCCAGCAGATCTGCACCTACCTCAAACTCGACTACAACCGCGT
CAAGCGCGATCTCGACTTTTTCCACTCGGTGCTCGAACGCATCAAGCGCTCCAAAGAAGTCGTCGACGAACTGAGCCAGA
CCGAGCGCCGCAAGCGCGAGGAACGGGCCGTTTCCCAGCCTGGTTGA

Upstream 100 bases:

>100_bases
GCCCAGGTGATAGAAGCTCTGGAGCAGCTGGCGGGGGCAGGCTTGCTGTCCGGGCTCCAGCAGTAGACAATGGTTCAGGA
CGCCTCCTGAGAGTATCGAA

Downstream 100 bases:

>100_bases
GGCGAGGGTTGCTGCGCGTCGGCATTCTGGCCTCCGGTAGCGGCACCAACTTTCAGGTGCTCGCCGATGCGGCGCGCTCG
GGCCGGTTGCCAGTCGAAAT

Product: Thf1-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTSKRTVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALMEGYTPVEQRDAILRAL
CTALELSYEQLHTDAAQWRAIAAELPAQEVLEVMAGKREAGDGRLKAMGDTLAGIANAERFKYSRLFSLGLANILEQAGR
AAAMSEKDRLERLQQICTYLKLDYNRVKRDLDFFHSVLERIKRSKEVVDELSQTERRKREERAVSQPG

Sequences:

>Translated_228_residues
MTSKRTVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALMEGYTPVEQRDAILRAL
CTALELSYEQLHTDAAQWRAIAAELPAQEVLEVMAGKREAGDGRLKAMGDTLAGIANAERFKYSRLFSLGLANILEQAGR
AAAMSEKDRLERLQQICTYLKLDYNRVKRDLDFFHSVLERIKRSKEVVDELSQTERRKREERAVSQPG
>Mature_227_residues
TSKRTVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALMEGYTPVEQRDAILRALC
TALELSYEQLHTDAAQWRAIAAELPAQEVLEVMAGKREAGDGRLKAMGDTLAGIANAERFKYSRLFSLGLANILEQAGRA
AAMSEKDRLERLQQICTYLKLDYNRVKRDLDFFHSVLERIKRSKEVVDELSQTERRKREERAVSQPG

Specific function: May be involved in photosynthetic membrane biogenesis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the THF1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): THF1_GLOVI (Q7NKS7)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_924346.1
- GeneID:   2598768
- GenomeReviews:   BA000045_GR
- KEGG:   gvi:glr1400
- NMPDR:   fig|251221.1.peg.1400
- HOGENOM:   HBG634536
- OMA:   RTVSDTK
- ProtClustDB:   PRK13266
- BioCyc:   GVIO251221:GLR1400-MONOMER
- HAMAP:   MF_01843
- InterPro:   IPR017499
- TIGRFAMs:   TIGR03060

Pfam domain/function: PF11264 ThylakoidFormat

EC number: NA

Molecular weight: Translated: 26020; Mature: 25889

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKRTVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAY
CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
QALMEGYTPVEQRDAILRALCTALELSYEQLHTDAAQWRAIAAELPAQEVLEVMAGKREA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
GDGRLKAMGDTLAGIANAERFKYSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLDYNRVKRDLDFFHSVLERIKRSKEVVDELSQTERRKREERAVSQPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TSKRTVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAY
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
QALMEGYTPVEQRDAILRALCTALELSYEQLHTDAAQWRAIAAELPAQEVLEVMAGKREA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
GDGRLKAMGDTLAGIANAERFKYSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLDYNRVKRDLDFFHSVLERIKRSKEVVDELSQTERRKREERAVSQPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292