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The map label for this gene is rbpE [H]

Identifier: 37520960

GI number: 37520960

Start: 1494254

End: 1494622

Strand: Reverse

Name: rbpE [H]

Synonym: gll1391

Alternate gene names: 37520960

Gene position: 1494622-1494254 (Counterclockwise)

Preceding gene: 37520961

Following gene: 37520953

Centisome position: 32.08

GC content: 66.12

Gene sequence:

>369_bases
GTGACTTTATTTGTGGGTAACCTGCCCTTCTCTGCCACCGAGCAGGAAATCGTCGAAGCCTTCACCGAGTACGGCGAAGT
GAAATCGGTCAAGATTCCGATGGACCGGGAGACTGGTCGTCCCCGGGGCTTTGCCTTCGTGGACCTCGAATCGGAAACGG
CCGAGCAGGCAGCCATTGACGATCTGGACGGCGCCACCTGGAACAACCGTGAAATTCGCGTCAACAAGGCGGAGCCTCGC
CCCGACCGCCGTGCCGGCGGCGGCGGCGGTGGCGGCAACCGTAGTGGCGGCGGTGGCGGTGGCTACCGCGGTAGCGGTGG
TGGCGGTGGCGGTGCGGGTGGCGGCGGTGGCCGCGACCGCCGCTACTAA

Upstream 100 bases:

>100_bases
ATACCCACCCGGGATTGACGGATGTCCATTTCGTGCAAGCCATCGGTAGGGTCGCTGTTTTGTCCTTGTCGATTGGTTCA
TCTCGTTCTGGAGACAAGCA

Downstream 100 bases:

>100_bases
GCGATAAGCCATATCAAGCCCGGCGACGTACTGCTCTCGCCGGGTTTTTGCATTCTGCCGTTATCTACGGACCGGCAGCG
ACGAAGCGAATCTGTAGGAA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MTLFVGNLPFSATEQEIVEAFTEYGEVKSVKIPMDRETGRPRGFAFVDLESETAEQAAIDDLDGATWNNREIRVNKAEPR
PDRRAGGGGGGGNRSGGGGGGYRGSGGGGGGAGGGGGRDRRY

Sequences:

>Translated_122_residues
MTLFVGNLPFSATEQEIVEAFTEYGEVKSVKIPMDRETGRPRGFAFVDLESETAEQAAIDDLDGATWNNREIRVNKAEPR
PDRRAGGGGGGGNRSGGGGGGYRGSGGGGGGAGGGGGRDRRY
>Mature_121_residues
TLFVGNLPFSATEQEIVEAFTEYGEVKSVKIPMDRETGRPRGFAFVDLESETAEQAAIDDLDGATWNNREIRVNKAEPRP
DRRAGGGGGGGNRSGGGGGGYRGSGGGGGGAGGGGGRDRRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=89, Percent_Identity=39.3258426966292, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=36.8421052631579, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=36.8421052631579, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=47.5, Blast_Score=82, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=48.0519480519481, Blast_Score=81, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=45.4545454545455, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6321599, Length=81, Percent_Identity=41.9753086419753, Blast_Score=72, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=39.4736842105263, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=38.4615384615385, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 12610; Mature: 12479

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLFVGNLPFSATEQEIVEAFTEYGEVKSVKIPMDRETGRPRGFAFVDLESETAEQAAID
CEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHC
DLDGATWNNREIRVNKAEPRPDRRAGGGGGGGNRSGGGGGGYRGSGGGGGGAGGGGGRDR
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RY
CC
>Mature Secondary Structure 
TLFVGNLPFSATEQEIVEAFTEYGEVKSVKIPMDRETGRPRGFAFVDLESETAEQAAID
EEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHC
DLDGATWNNREIRVNKAEPRPDRRAGGGGGGGNRSGGGGGGYRGSGGGGGGAGGGGGRDR
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RY
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]