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The map label for this gene is ctpA [H]

Identifier: 37520878

GI number: 37520878

Start: 1402352

End: 1403653

Strand: Reverse

Name: ctpA [H]

Synonym: gll1309

Alternate gene names: 37520878

Gene position: 1403653-1402352 (Counterclockwise)

Preceding gene: 37520879

Following gene: 37520877

Centisome position: 30.13

GC content: 67.13

Gene sequence:

>1302_bases
ATGGCGCAGCGGCTTCGCCGGGTGCTACCGCTTTTGGTCTGGCTCGGGGTGCTTTGGGGGCCGGGTGTGCCGACCATCCT
TGCCCGACAGGCTGCCGCTGAGGCACCCATTAAGTCGCGCCTGGCGGATTCGCCCAAGGCTCTGGTAGACGAAGTTTGGC
AGACGGTCGGGCGCGAATTTTATGACCCGGCCTTCAACCGAATCGACTGGCTGCAGGTGCGCAGCGAACTGCTCGGCCGC
GAGTACGCCTCCAAAGACGATGCCTATCGGGCCGTCCGCACGGCGCTCAAAAAGCTCGGTGATCCCTACACCCGCTTTTT
GACCCCCCGCGAGTATCAAAACCTGCTGGAGCAGACCAGCGGCGAGTCGATCGGGGTGGGGATGAACCTGGGCACGGTCG
AAGGCAGCGGGGTGCCGGTGATCGTCCGGATTTTTCCGGACGGCCCCGCGGCCCGGGCAGGACTCCAAGTCAAAGACCAG
ATCGTTGCGGTTGATCGCCAGTCGGTGGCGGGGTTGAGCCTCGACACGGTCAGCCGGCGCGTCCGCGGCGAGAAGGGCGC
CGTGCTCACCCTGACGCTGCGGCGCGGGAGCGGCAAGCTGCTCACCGTCACCCTGACGCGCGCCGCCATCGAATTGCCGG
CGATCAAGGCCCGGCTGAAGCAAGAGGGCGGTTTCAAGCTGGGCTACATCCAGTTGCAGCAATTCAACGCCAAGGCCGGT
CGGGAAGTGCGCGCCGCCCTCGACGTCCTCGGGGGCGAGGGTGCCCGGGGATGGATTTTGGATCTGCGCAACAACCCCGG
TGGCCGGGTGGATGCCGCCACCGAGGTGACCAGTCTGCTGCTGGCCGAAGGCGCAATCGTCTCGGTGGTCGATCGCACCG
GTGAGCGCGAGACGATCCGCGCCACCGGCCGTGCCCGCACCGACCTGCCGCTGGTGGTCATGGTGGACCGCGGCTCCGCC
TCCGCCAGCGAAATCGTCGCCGGTGCGCTGCAAGATCACCGCCGCGCCACCCTGGTGGGCATGCCGACGTTTGGCAAAGG
GGTCATCCAGCAGATCAACGGCCTATCGGACGGCTCGGGTCTCAACGTCACCATCGCCCGCTACCGGACCCCCTCCGGCC
GGGAAATCCATAAAAAAGGGATCTCCCCGGATGTCCTGGTGAGCATCCCGGAGGGAGTGCGCCAGAAGCTCACCGCCTCC
GGGCAGTGGGGCAGCGAGGCCGACGAGCAGTACCGCCGGGCGGCAGCGGTGCTCACCGAACAGCTGCAAAAGACCATCGG
CCTCGAGGTGCCGGACGGCTGA

Upstream 100 bases:

>100_bases
AGCGCGCAAACGGGTCGGGCGATAATGACTGCGTCGCGTTCGCAACCGAGCCGGCAGCCGCTCGAATGGGTTGTCGGTCT
TTGAGACGGGAGGAAAAACC

Downstream 100 bases:

>100_bases
GCGTCCGATCGGACACTGTACTTCCTGGGATTGATACCCTCCAGGTCCATGGGGCGCGAGCCTGAATGCATGCCCAGGCG
GGGGGCTATCTGGTGATAGT

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MAQRLRRVLPLLVWLGVLWGPGVPTILARQAAAEAPIKSRLADSPKALVDEVWQTVGREFYDPAFNRIDWLQVRSELLGR
EYASKDDAYRAVRTALKKLGDPYTRFLTPREYQNLLEQTSGESIGVGMNLGTVEGSGVPVIVRIFPDGPAARAGLQVKDQ
IVAVDRQSVAGLSLDTVSRRVRGEKGAVLTLTLRRGSGKLLTVTLTRAAIELPAIKARLKQEGGFKLGYIQLQQFNAKAG
REVRAALDVLGGEGARGWILDLRNNPGGRVDAATEVTSLLLAEGAIVSVVDRTGERETIRATGRARTDLPLVVMVDRGSA
SASEIVAGALQDHRRATLVGMPTFGKGVIQQINGLSDGSGLNVTIARYRTPSGREIHKKGISPDVLVSIPEGVRQKLTAS
GQWGSEADEQYRRAAAVLTEQLQKTIGLEVPDG

Sequences:

>Translated_433_residues
MAQRLRRVLPLLVWLGVLWGPGVPTILARQAAAEAPIKSRLADSPKALVDEVWQTVGREFYDPAFNRIDWLQVRSELLGR
EYASKDDAYRAVRTALKKLGDPYTRFLTPREYQNLLEQTSGESIGVGMNLGTVEGSGVPVIVRIFPDGPAARAGLQVKDQ
IVAVDRQSVAGLSLDTVSRRVRGEKGAVLTLTLRRGSGKLLTVTLTRAAIELPAIKARLKQEGGFKLGYIQLQQFNAKAG
REVRAALDVLGGEGARGWILDLRNNPGGRVDAATEVTSLLLAEGAIVSVVDRTGERETIRATGRARTDLPLVVMVDRGSA
SASEIVAGALQDHRRATLVGMPTFGKGVIQQINGLSDGSGLNVTIARYRTPSGREIHKKGISPDVLVSIPEGVRQKLTAS
GQWGSEADEQYRRAAAVLTEQLQKTIGLEVPDG
>Mature_432_residues
AQRLRRVLPLLVWLGVLWGPGVPTILARQAAAEAPIKSRLADSPKALVDEVWQTVGREFYDPAFNRIDWLQVRSELLGRE
YASKDDAYRAVRTALKKLGDPYTRFLTPREYQNLLEQTSGESIGVGMNLGTVEGSGVPVIVRIFPDGPAARAGLQVKDQI
VAVDRQSVAGLSLDTVSRRVRGEKGAVLTLTLRRGSGKLLTVTLTRAAIELPAIKARLKQEGGFKLGYIQLQQFNAKAGR
EVRAALDVLGGEGARGWILDLRNNPGGRVDAATEVTSLLLAEGAIVSVVDRTGERETIRATGRARTDLPLVVMVDRGSAS
ASEIVAGALQDHRRATLVGMPTFGKGVIQQINGLSDGSGLNVTIARYRTPSGREIHKKGISPDVLVSIPEGVRQKLTASG
QWGSEADEQYRRAAAVLTEQLQKTIGLEVPDG

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=327, Percent_Identity=34.2507645259939, Blast_Score=141, Evalue=7e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 46715; Mature: 46584

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQRLRRVLPLLVWLGVLWGPGVPTILARQAAAEAPIKSRLADSPKALVDEVWQTVGREF
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHH
YDPAFNRIDWLQVRSELLGREYASKDDAYRAVRTALKKLGDPYTRFLTPREYQNLLEQTS
HCHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCC
GESIGVGMNLGTVEGSGVPVIVRIFPDGPAARAGLQVKDQIVAVDRQSVAGLSLDTVSRR
CCCEEECCEECCCCCCCCEEEEEEECCCCCHHCCCCCHHHEEEECCHHHCCCCHHHHHHH
VRGEKGAVLTLTLRRGSGKLLTVTLTRAAIELPAIKARLKQEGGFKLGYIQLQQFNAKAG
HCCCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC
REVRAALDVLGGEGARGWILDLRNNPGGRVDAATEVTSLLLAEGAIVSVVDRTGERETIR
HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEHHCCCCCCEEE
ATGRARTDLPLVVMVDRGSASASEIVAGALQDHRRATLVGMPTFGKGVIQQINGLSDGSG
ECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCC
LNVTIARYRTPSGREIHKKGISPDVLVSIPEGVRQKLTASGQWGSEADEQYRRAAAVLTE
CEEEEEEEECCCCCHHHHCCCCCCEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
QLQKTIGLEVPDG
HHHHHHCCCCCCC
>Mature Secondary Structure 
AQRLRRVLPLLVWLGVLWGPGVPTILARQAAAEAPIKSRLADSPKALVDEVWQTVGREF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHH
YDPAFNRIDWLQVRSELLGREYASKDDAYRAVRTALKKLGDPYTRFLTPREYQNLLEQTS
HCHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCC
GESIGVGMNLGTVEGSGVPVIVRIFPDGPAARAGLQVKDQIVAVDRQSVAGLSLDTVSRR
CCCEEECCEECCCCCCCCEEEEEEECCCCCHHCCCCCHHHEEEECCHHHCCCCHHHHHHH
VRGEKGAVLTLTLRRGSGKLLTVTLTRAAIELPAIKARLKQEGGFKLGYIQLQQFNAKAG
HCCCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC
REVRAALDVLGGEGARGWILDLRNNPGGRVDAATEVTSLLLAEGAIVSVVDRTGERETIR
HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEHHCCCCCCEEE
ATGRARTDLPLVVMVDRGSASASEIVAGALQDHRRATLVGMPTFGKGVIQQINGLSDGSG
ECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCC
LNVTIARYRTPSGREIHKKGISPDVLVSIPEGVRQKLTASGQWGSEADEQYRRAAAVLTE
CEEEEEEEECCCCCHHHHCCCCCCEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
QLQKTIGLEVPDG
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]