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The map label for this gene is glgB

Identifier: 37520875

GI number: 37520875

Start: 1397516

End: 1399717

Strand: Direct

Name: glgB

Synonym: gvip192

Alternate gene names: 37520875

Gene position: 1397516-1399717 (Clockwise)

Preceding gene: 37520874

Following gene: 37520880

Centisome position: 30.0

GC content: 60.63

Gene sequence:

>2202_bases
ATGAATCCAACTGTGGAGCTGCGGGATATCGAAGCGCTGGTGACCAATTTGCACGCCGATCCCTTTGCCATTCTCGGTCC
GCACCGAGCAGAGGACGGTGGGGCCTGGGTGGTGCGGACTTACCAGCCGGGTGCTTCCCGGGTGGTTCTGCTCGGCGAAT
CCGGCGAGCTTGCTATGGAGAATCGTCGGCACCCGGATCTGTTCGAGTGCGCCGTGCCCACGGCTCCAGGGGCCTACCGG
CTGCGGGTGGAAGACGCTTGGGGCGAGCGTTTGATCGAGGACGCCTATCGGTTTCGCGGCTCGCTCTTGAGCGATCTCGA
CGGCCACCTGTTTGCCGAGGGCAACCATCACCGCATCTACGAGAAATTGGGTGCCCACCCGGCCGTCTTCGAGGGGGTGG
CGGGGGTCTATTTTGCGGTGTGGGCGCCCAGTGCCCGCAATGTGAGTGTGCTGGGCGACTTCAATCGCTGGGACGGCCGC
TTCCACCAGATGCGCAGAGTCGAGCGTTCCACCGGCATCTGGGAGCTATTCATACCTGAACTGGGCGAGGGGACGGTCTA
CAAATTCGAGATCAAAAACGGCTTCGGCCATATTTATGAAAAGTCCGACCCCTACGCTTTCCAGCAGGAATTGCGCCCCA
AGAGCGGTTCGGTGGTAGCCGATCTCGACCGCTACAGCTGGAACGACGGTGAATGGCTCAAGCGGCGCGCACTCTCCAAC
CCGCTCAAGCAGCCACTTGCCATTTACGAGGTGCACCTGGGCTCCTGGATGCGGGTGCCCGAGGAAGGCGACCGCTTCTT
GAGCTACACAGAACTGGCGGACAAGCTTATTCCTTACGTCAAGGATCTGGGCTTTACCCACATCGAACTGCTGCCGATCC
TGGAGCACCCCTTCGACGGCAGTTGGGGCTATCAGGTGCTGGGCTACTACGCCCCCACTTCGCGCTTCGGAAACCCGACG
GAGTTCATGGCCTTTGTCGATCGCTGCCACCAGTCAGGGATCGGCGTCATCCTCGACTGGGTACCGGCCCACTTTCCTAA
AGACGGCCACGGCCTCGCCCTTTTCGACGGCACCCATCTGTATGAGCACGCCGACTCGCGCCAGGGCGAACACAAAGAGT
GGGGCACCCTCGTGTTCAACTACGGGCGCAACGAGGTGCGCAACTTCTTGATTGCCAACGCCCTATTTTGGTTCGAGCGC
TACCACATCGACGGCATCCGGGTGGACGCGGTAGCGGCGATGCTCTATCTCGATTACTCGCGCCACGACGGCGAGTGGGT
GGCCAACCGCTACGGCGGGCGCGAGAACCTCGAAGCGATCGGTTTTTTGCGCCAGCTCAATGAACTGATTTTTCTTTACT
ATCCCGGGGCACTCTCGATCGCCGAGGAGTCCACCGCCTGGCCCCTGGTCACGCGACCCCCCTATCTCGGGGGCCTGGGC
TTCAACCTCAAGTGGCACATGGGCTGGATGCACGATACCCTCGCCTACTTCCGGACCGATCCGCTCTTTCGCCGCTACCG
GCACAACGACATCACCTTCTCGATTACTTACACGTTCTACGAGAACTTTGTGCTGGCCCTTTCCCACGACGAAGTCGTGC
ACATGAAAGGCTCGATCATCGGCAAGATGCCGGGGGACGGCTGGCAAAAATTCGCCAATTTGCGGGCGCTCTTCACTTTT
ATGTACGGGCATCCGGGCAAGAAGACGCTGTTTATGGGCATGGAATTTGCCCACGGCCGCGAGTGGAACGCCTACCAATC
GCTCGACTGGCACCTGCTCGACTACCCGCAGCACCGGCAGATGCAGCAGTTCGTGCGCGCTCTCAACCGGCTTTACACCG
GCCAGCCCGCCCTGTACGAAGAAGATTGCAACCCGGCGGGCTTTTTCTGGGTCGACTGCCACGACGTGCTCAACAGCGTC
TTCACCTTCGTGCGCCGCGGCAAAGACCCGAGCGAACAACTGCTGTTCGTCTGCAACTTTACCCCGACCTATCACCCTCA
CTACCGGGTGGGTGTACTGGAGACGGGTTTCTGGCAGGAAATTTTCAACAGCGACTCGGGTATCTACGGGGGCAGCAACA
AAGGCAACCTCGGCGGCCTGTGGAGCGAGAACTGGGCCATCCACGGCCAGCCTTATTCGCTGGGTCTGCAACTGCCTCCT
CTGGGCTGCCTGGTCTTCAAGCGGCGCAAGGAACAGGACTAA

Upstream 100 bases:

>100_bases
GCTCGACAGGATCGTTTCAAAAGGTGTATTTAATTTAAGTATAAGTAATGAACCGGTTGGCGGCGTTGTCGACCGGGGGA
GTCGATTTGAGAAATAATTA

Downstream 100 bases:

>100_bases
CGATCGCGGGGCTTGTCCTCACCCGACATCGCCCGCGCACCCGAAAAGACCATCACCAGGCCGCCTGCCACGATCCCGGC
GGCCAGCAGCACCATCACCA

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE

Number of amino acids: Translated: 733; Mature: 733

Protein sequence:

>733_residues
MNPTVELRDIEALVTNLHADPFAILGPHRAEDGGAWVVRTYQPGASRVVLLGESGELAMENRRHPDLFECAVPTAPGAYR
LRVEDAWGERLIEDAYRFRGSLLSDLDGHLFAEGNHHRIYEKLGAHPAVFEGVAGVYFAVWAPSARNVSVLGDFNRWDGR
FHQMRRVERSTGIWELFIPELGEGTVYKFEIKNGFGHIYEKSDPYAFQQELRPKSGSVVADLDRYSWNDGEWLKRRALSN
PLKQPLAIYEVHLGSWMRVPEEGDRFLSYTELADKLIPYVKDLGFTHIELLPILEHPFDGSWGYQVLGYYAPTSRFGNPT
EFMAFVDRCHQSGIGVILDWVPAHFPKDGHGLALFDGTHLYEHADSRQGEHKEWGTLVFNYGRNEVRNFLIANALFWFER
YHIDGIRVDAVAAMLYLDYSRHDGEWVANRYGGRENLEAIGFLRQLNELIFLYYPGALSIAEESTAWPLVTRPPYLGGLG
FNLKWHMGWMHDTLAYFRTDPLFRRYRHNDITFSITYTFYENFVLALSHDEVVHMKGSIIGKMPGDGWQKFANLRALFTF
MYGHPGKKTLFMGMEFAHGREWNAYQSLDWHLLDYPQHRQMQQFVRALNRLYTGQPALYEEDCNPAGFFWVDCHDVLNSV
FTFVRRGKDPSEQLLFVCNFTPTYHPHYRVGVLETGFWQEIFNSDSGIYGGSNKGNLGGLWSENWAIHGQPYSLGLQLPP
LGCLVFKRRKEQD

Sequences:

>Translated_733_residues
MNPTVELRDIEALVTNLHADPFAILGPHRAEDGGAWVVRTYQPGASRVVLLGESGELAMENRRHPDLFECAVPTAPGAYR
LRVEDAWGERLIEDAYRFRGSLLSDLDGHLFAEGNHHRIYEKLGAHPAVFEGVAGVYFAVWAPSARNVSVLGDFNRWDGR
FHQMRRVERSTGIWELFIPELGEGTVYKFEIKNGFGHIYEKSDPYAFQQELRPKSGSVVADLDRYSWNDGEWLKRRALSN
PLKQPLAIYEVHLGSWMRVPEEGDRFLSYTELADKLIPYVKDLGFTHIELLPILEHPFDGSWGYQVLGYYAPTSRFGNPT
EFMAFVDRCHQSGIGVILDWVPAHFPKDGHGLALFDGTHLYEHADSRQGEHKEWGTLVFNYGRNEVRNFLIANALFWFER
YHIDGIRVDAVAAMLYLDYSRHDGEWVANRYGGRENLEAIGFLRQLNELIFLYYPGALSIAEESTAWPLVTRPPYLGGLG
FNLKWHMGWMHDTLAYFRTDPLFRRYRHNDITFSITYTFYENFVLALSHDEVVHMKGSIIGKMPGDGWQKFANLRALFTF
MYGHPGKKTLFMGMEFAHGREWNAYQSLDWHLLDYPQHRQMQQFVRALNRLYTGQPALYEEDCNPAGFFWVDCHDVLNSV
FTFVRRGKDPSEQLLFVCNFTPTYHPHYRVGVLETGFWQEIFNSDSGIYGGSNKGNLGGLWSENWAIHGQPYSLGLQLPP
LGCLVFKRRKEQD
>Mature_733_residues
MNPTVELRDIEALVTNLHADPFAILGPHRAEDGGAWVVRTYQPGASRVVLLGESGELAMENRRHPDLFECAVPTAPGAYR
LRVEDAWGERLIEDAYRFRGSLLSDLDGHLFAEGNHHRIYEKLGAHPAVFEGVAGVYFAVWAPSARNVSVLGDFNRWDGR
FHQMRRVERSTGIWELFIPELGEGTVYKFEIKNGFGHIYEKSDPYAFQQELRPKSGSVVADLDRYSWNDGEWLKRRALSN
PLKQPLAIYEVHLGSWMRVPEEGDRFLSYTELADKLIPYVKDLGFTHIELLPILEHPFDGSWGYQVLGYYAPTSRFGNPT
EFMAFVDRCHQSGIGVILDWVPAHFPKDGHGLALFDGTHLYEHADSRQGEHKEWGTLVFNYGRNEVRNFLIANALFWFER
YHIDGIRVDAVAAMLYLDYSRHDGEWVANRYGGRENLEAIGFLRQLNELIFLYYPGALSIAEESTAWPLVTRPPYLGGLG
FNLKWHMGWMHDTLAYFRTDPLFRRYRHNDITFSITYTFYENFVLALSHDEVVHMKGSIIGKMPGDGWQKFANLRALFTF
MYGHPGKKTLFMGMEFAHGREWNAYQSLDWHLLDYPQHRQMQQFVRALNRLYTGQPALYEEDCNPAGFFWVDCHDVLNSV
FTFVRRGKDPSEQLLFVCNFTPTYHPHYRVGVLETGFWQEIFNSDSGIYGGSNKGNLGGLWSENWAIHGQPYSLGLQLPP
LGCLVFKRRKEQD

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family

Homologues:

Organism=Homo sapiens, GI189458812, Length=669, Percent_Identity=28.4005979073244, Blast_Score=200, Evalue=3e-51,
Organism=Escherichia coli, GI1789839, Length=738, Percent_Identity=49.8644986449864, Blast_Score=698, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17554896, Length=617, Percent_Identity=25.4457050243112, Blast_Score=167, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI32564391, Length=590, Percent_Identity=24.9152542372881, Blast_Score=147, Evalue=2e-35,
Organism=Saccharomyces cerevisiae, GI6320826, Length=651, Percent_Identity=27.4961597542243, Blast_Score=186, Evalue=1e-47,
Organism=Drosophila melanogaster, GI28573410, Length=634, Percent_Identity=29.8107255520505, Blast_Score=216, Evalue=6e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLGB_GLOVI (Q7NL20)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_924252.1
- ProteinModelPortal:   Q7NL20
- GeneID:   2598869
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.1306
- HOGENOM:   HBG287139
- OMA:   DGTCLYE
- ProtClustDB:   PRK05402
- BioCyc:   GVIO251221:GLR1306-MONOMER
- BRENDA:   2.4.1.18
- HAMAP:   MF_00685
- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756
- Gene3D:   G3DSA:2.60.40.1180
- Gene3D:   G3DSA:3.20.20.80
- Gene3D:   G3DSA:2.60.40.10
- TIGRFAMs:   TIGR01515

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48; SSF51445 Glyco_hydro_cat; SSF81296 Ig_E-set

EC number: =2.4.1.18

Molecular weight: Translated: 84412; Mature: 84412

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: ACT_SITE 304-304 ACT_SITE 339-339 ACT_SITE 344-344 ACT_SITE 407-407 ACT_SITE 409-409 ACT_SITE 462-462 ACT_SITE 529-529 ACT_SITE 530-530

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTVELRDIEALVTNLHADPFAILGPHRAEDGGAWVVRTYQPGASRVVLLGESGELAME
CCCCEEHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHC
NRRHPDLFECAVPTAPGAYRLRVEDAWGERLIEDAYRFRGSLLSDLDGHLFAEGNHHRIY
CCCCCCHHEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHH
EKLGAHPAVFEGVAGVYFAVWAPSARNVSVLGDFNRWDGRFHQMRRVERSTGIWELFIPE
HHHCCCHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCC
LGEGTVYKFEIKNGFGHIYEKSDPYAFQQELRPKSGSVVADLDRYSWNDGEWLKRRALSN
CCCCCEEEEEEECCCCEEEECCCCHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHCC
PLKQPLAIYEVHLGSWMRVPEEGDRFLSYTELADKLIPYVKDLGFTHIELLPILEHPFDG
HHHCCCEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCC
SWGYQVLGYYAPTSRFGNPTEFMAFVDRCHQSGIGVILDWVPAHFPKDGHGLALFDGTHL
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCHH
YEHADSRQGEHKEWGTLVFNYGRNEVRNFLIANALFWFERYHIDGIRVDAVAAMLYLDYS
HHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHEECC
RHDGEWVANRYGGRENLEAIGFLRQLNELIFLYYPGALSIAEESTAWPLVTRPPYLGGLG
CCCCCCHHHHCCCCCCHHHHHHHHHHCCEEEEEECCCEEECCCCCCCCEEECCCCCCCCC
FNLKWHMGWMHDTLAYFRTDPLFRRYRHNDITFSITYTFYENFVLALSHDEVVHMKGSII
CEEEEECCHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEEECCEEEEEECCCEEEECCCEE
GKMPGDGWQKFANLRALFTFMYGHPGKKTLFMGMEFAHGREWNAYQSLDWHLLDYPQHRQ
ECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCHHH
MQQFVRALNRLYTGQPALYEEDCNPAGFFWVDCHDVLNSVFTFVRRGKDPSEQLLFVCNF
HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCEEEEEEEC
TPTYHPHYRVGVLETGFWQEIFNSDSGIYGGSNKGNLGGLWSENWAIHGQPYSLGLQLPP
CCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECEECCC
LGCLVFKRRKEQD
CHHHHHHHHCCCC
>Mature Secondary Structure
MNPTVELRDIEALVTNLHADPFAILGPHRAEDGGAWVVRTYQPGASRVVLLGESGELAME
CCCCEEHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHC
NRRHPDLFECAVPTAPGAYRLRVEDAWGERLIEDAYRFRGSLLSDLDGHLFAEGNHHRIY
CCCCCCHHEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHH
EKLGAHPAVFEGVAGVYFAVWAPSARNVSVLGDFNRWDGRFHQMRRVERSTGIWELFIPE
HHHCCCHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCC
LGEGTVYKFEIKNGFGHIYEKSDPYAFQQELRPKSGSVVADLDRYSWNDGEWLKRRALSN
CCCCCEEEEEEECCCCEEEECCCCHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHCC
PLKQPLAIYEVHLGSWMRVPEEGDRFLSYTELADKLIPYVKDLGFTHIELLPILEHPFDG
HHHCCCEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCC
SWGYQVLGYYAPTSRFGNPTEFMAFVDRCHQSGIGVILDWVPAHFPKDGHGLALFDGTHL
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCHH
YEHADSRQGEHKEWGTLVFNYGRNEVRNFLIANALFWFERYHIDGIRVDAVAAMLYLDYS
HHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHEECC
RHDGEWVANRYGGRENLEAIGFLRQLNELIFLYYPGALSIAEESTAWPLVTRPPYLGGLG
CCCCCCHHHHCCCCCCHHHHHHHHHHCCEEEEEECCCEEECCCCCCCCEEECCCCCCCCC
FNLKWHMGWMHDTLAYFRTDPLFRRYRHNDITFSITYTFYENFVLALSHDEVVHMKGSII
CEEEEECCHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEEECCEEEEEECCCEEEECCCEE
GKMPGDGWQKFANLRALFTFMYGHPGKKTLFMGMEFAHGREWNAYQSLDWHLLDYPQHRQ
ECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCHHH
MQQFVRALNRLYTGQPALYEEDCNPAGFFWVDCHDVLNSVFTFVRRGKDPSEQLLFVCNF
HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCEEEEEEEC
TPTYHPHYRVGVLETGFWQEIFNSDSGIYGGSNKGNLGGLWSENWAIHGQPYSLGLQLPP
CCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECEECCC
LGCLVFKRRKEQD
CHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14621292